Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47091 * 2 1 4 4 C 1.45590 * 110.99962 * 59.33328 * 3 2 1 5 5 C 1.54641 * 108.47091 * 227.97194 * 4 3 2 6 6 S 1.82411 * 110.54510 * 321.26453 * 5 4 3 7 7 C 1.79398 * 106.81222 * 319.26318 * 6 5 4 8 8 C 1.55290 * 109.72675 * 86.88897 * 7 6 5 9 9 C 1.45390 * 109.84919 * 288.76448 * 8 7 6 10 10 H 1.08996 * 108.09921 * 302.09166 * 9 8 7 11 11 C 1.50701 * 108.24610 * 185.17639 * 9 8 7 12 12 H 1.07998 * 119.99988 * 298.70516 * 11 9 8 13 13 C 1.37873 * 119.99734 * 118.70293 * 11 9 8 14 14 N 1.31515 * 120.00230 * 354.78026 * 13 11 9 15 15 Si 1.86808 * 120.00022 * 174.77535 * 13 11 9 16 16 H 1.48501 * 109.47041 * 94.99679 * 15 13 11 17 17 H 1.48497 * 109.47159 * 214.99975 * 15 13 11 18 18 H 1.48505 * 109.46830 * 334.99573 * 15 13 11 19 19 H 1.08996 * 109.46933 * 293.33389 * 1 2 3 20 20 H 1.08999 * 109.47185 * 53.34012 * 1 2 3 21 21 H 1.09005 * 109.47145 * 173.34335 * 1 2 3 22 22 H 1.08993 * 109.47597 * 120.00676 * 2 1 3 23 23 H 1.09004 * 109.46862 * 240.00615 * 2 1 3 24 24 H 1.08992 * 109.63496 * 347.67393 * 4 3 2 25 25 H 1.09001 * 109.63230 * 108.27981 * 4 3 2 26 26 H 1.09006 * 109.26229 * 200.98928 * 5 4 3 27 27 H 1.09006 * 109.22879 * 81.52159 * 5 4 3 28 28 H 1.09006 * 109.42715 * 326.80778 * 7 6 5 29 29 H 1.09002 * 109.38388 * 206.94421 * 7 6 5 30 30 H 1.08998 * 109.40817 * 168.64781 * 8 7 6 31 31 H 1.09000 * 109.34173 * 48.84050 * 8 7 6 32 32 H 0.97000 * 119.99825 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5399 2.1079 1.1691 5 6 0.9698 3.4681 0.7042 6 16 1.9966 4.1703 -0.6299 7 6 3.7070 3.8608 -0.1858 8 6 4.1359 2.4587 -0.6972 9 6 3.4846 1.4252 0.0912 10 1 3.7576 1.5737 1.1359 11 6 4.0216 0.0875 -0.3485 12 1 3.8838 -0.2410 -1.3681 13 6 4.6889 -0.7168 0.5507 14 7 4.9471 -0.2752 1.7623 15 14 5.2263 -2.4338 0.0482 16 1 6.6349 -2.3944 -0.4204 17 1 5.1178 -3.3475 1.2139 18 1 4.3533 -2.9246 -1.0483 19 1 -0.3633 0.4070 0.9436 20 1 -0.3633 0.6136 -0.8244 21 1 -0.3634 -1.0208 -0.1191 22 1 1.8934 -0.5139 0.8898 23 1 1.8933 -0.5138 -0.8901 24 1 0.7566 1.5310 1.6606 25 1 2.3655 2.2741 1.8612 26 1 0.9543 4.1587 1.5474 27 1 -0.0469 3.3249 0.3380 28 1 3.8127 3.8994 0.8984 29 1 4.3419 4.6220 -0.6392 30 1 5.2172 2.3555 -0.6072 31 1 3.8476 2.3521 -1.7430 32 1 5.4169 -0.8410 2.3949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = -5.269809 kcal Electronic energy + Delta-G solvation = -13552.029101 eV Core-core repulsion = 11445.377296 eV Total energy + Delta-G solvation = -2106.651806 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.84028 -35.23217 -34.08389 -32.28974 -30.25612 -27.96108 -25.41222 -23.97215 -22.14416 -20.97919 -18.60813 -17.43071 -16.73290 -16.19636 -15.94643 -15.52583 -15.22388 -14.70906 -14.19495 -13.90515 -13.77383 -13.15169 -12.92991 -12.87187 -12.54538 -12.47243 -12.31680 -11.90194 -11.84614 -11.46598 -11.45459 -10.73929 -10.68768 -10.41067 -9.01385 -8.23205 -8.13502 -6.27626 1.03601 1.34431 1.37599 1.47291 1.97542 2.36354 3.04921 3.54578 4.07439 4.15231 4.18962 4.29659 4.41530 4.56730 4.65862 4.70401 4.75739 4.82733 4.97145 5.07578 5.12923 5.22784 5.32000 5.46188 5.61825 5.65273 5.86718 6.10340 6.48933 6.77533 6.92077 7.38193 8.86660 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035215 B = 0.011972 C = 0.010066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.921944 B = 2338.325963 C = 2780.937638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 N -0.499 5.499 4 C 0.030 3.970 5 C -0.058 4.058 6 S -0.262 6.262 7 C -0.081 4.081 8 C -0.072 4.072 9 C 0.166 3.834 10 H 0.021 0.979 11 C -0.521 4.521 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.926 5.926 15 Si 0.945 3.055 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.266 1.266 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.000 1.000 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 4.487 -1.129 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 N -0.222 5.222 4 C -0.101 4.101 5 C -0.206 4.206 6 S -0.036 6.036 7 C -0.230 4.230 8 C -0.112 4.112 9 C 0.059 3.941 10 H 0.039 0.961 11 C -0.560 4.560 12 H 0.066 0.934 13 C -0.177 4.177 14 N -0.566 5.566 15 Si 0.771 3.229 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.190 1.190 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.019 0.981 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.150 5.177 -2.312 9.125 hybrid contribution 1.520 -2.155 1.891 3.245 sum -5.630 3.022 -0.421 6.404 Atomic orbital electron populations 1.21882 0.94344 1.01845 1.01795 1.21724 0.94070 0.89872 0.99312 1.63606 1.09103 1.13172 1.36355 1.22769 0.99325 0.95230 0.92754 1.23965 1.00696 0.97571 0.98402 1.85384 1.03554 1.73926 1.40763 1.23570 0.95233 1.01231 1.02929 1.20624 0.98526 0.92230 0.99794 1.18434 0.85126 0.94271 0.96260 0.96080 1.21435 1.35283 1.02963 0.96331 0.93353 1.25610 0.95594 1.01540 0.94935 1.70006 1.42274 1.37898 1.06402 0.85732 0.78742 0.80496 0.77966 1.20254 1.21037 1.19021 0.92642 0.91887 0.91676 0.98121 0.92404 0.90587 0.95456 0.89307 0.87306 0.91655 0.87348 0.93297 0.92807 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.64 71.98 0.69 -3.79 16 2 C 0.08 3.31 4.48 86.30 0.39 3.70 16 3 N -0.50 -21.24 3.97 -889.49 -3.53 -24.77 16 4 C 0.03 1.13 5.09 87.11 0.44 1.57 16 5 C -0.06 -1.78 6.84 72.54 0.50 -1.29 16 6 S -0.26 -9.08 21.11 -56.49 -1.19 -10.28 16 7 C -0.08 -2.97 5.97 72.77 0.43 -2.54 16 8 C -0.07 -3.14 4.90 29.06 0.14 -3.00 16 9 C 0.17 8.05 1.88 41.86 0.08 8.13 16 10 H 0.02 1.18 5.12 -2.39 -0.01 1.17 16 11 C -0.52 -27.73 5.50 25.60 0.14 -27.59 16 12 H 0.05 2.62 7.43 -2.91 -0.02 2.60 16 13 C 0.02 1.22 5.33 84.65 0.45 1.67 16 14 N -0.93 -52.85 12.57 21.45 0.27 -52.58 16 15 Si 0.94 43.02 29.54 68.60 2.03 45.04 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H 0.05 1.61 6.35 -2.39 -0.02 1.60 16 20 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.00 0.02 7.75 -2.39 -0.02 0.00 16 23 H 0.06 2.63 6.73 -2.38 -0.02 2.61 16 24 H 0.08 2.62 5.65 -2.39 -0.01 2.61 16 25 H 0.03 1.17 6.41 -2.39 -0.02 1.15 16 26 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.11 3.00 8.14 -2.38 -0.02 2.99 16 28 H 0.06 2.45 7.97 -2.48 -0.02 2.43 16 29 H 0.11 3.45 8.14 -2.49 -0.02 3.43 16 30 H 0.05 2.25 8.08 -2.39 -0.02 2.23 16 31 H 0.05 2.40 8.12 -2.39 -0.02 2.38 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -57.68 256.77 1.92 -55.76 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.08 Total: 9.97 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 3.27 Total: -23.15 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.26 Total: -77.35 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.19 Total: -10.28 kcal Total: -57.68 1.92 -55.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.491 kcal (2) G-P(sol) polarization free energy of solvation -57.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds