Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47529 * 2 1 4 4 C 1.36544 * 125.57182 * 265.02799 * 3 2 1 5 5 C 1.34919 * 109.52133 * 179.97438 * 4 3 2 6 6 C 1.41049 * 107.79766 * 359.97438 * 5 4 3 7 7 C 1.37889 * 125.56815 * 84.71706 * 3 2 1 8 8 C 1.38969 * 133.43287 * 0.74075 * 7 3 2 9 9 C 1.38403 * 121.04899 * 179.62463 * 8 7 3 10 10 C 1.37632 * 121.57517 * 359.68670 * 9 8 7 11 11 C 1.40831 * 120.04335 * 0.02562 * 10 9 8 12 12 C 1.40596 * 120.71874 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00334 * 204.17847 * 12 11 10 14 14 C 1.40026 * 119.99765 * 24.18454 * 12 11 10 15 15 N 1.30821 * 120.00112 * 17.70307 * 14 12 11 16 16 Si 1.86801 * 119.99980 * 197.69997 * 14 12 11 17 17 H 1.48502 * 109.46918 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46925 * 119.99779 * 16 14 12 19 19 H 1.48494 * 109.47336 * 239.99940 * 16 14 12 20 20 H 1.09001 * 109.46842 * 300.00196 * 1 2 3 21 21 H 1.09003 * 109.46780 * 59.99471 * 1 2 3 22 22 H 1.08992 * 109.47302 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46683 * 240.00116 * 2 1 3 24 24 H 1.08994 * 109.46923 * 120.00773 * 2 1 3 25 25 H 1.08004 * 125.23681 * 359.97163 * 4 3 2 26 26 H 1.07998 * 126.09874 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.47316 * 359.31232 * 8 7 3 28 28 H 1.07997 * 119.21095 * 179.71239 * 9 8 7 29 29 H 1.08002 * 119.97858 * 180.02562 * 10 9 8 30 30 H 0.97000 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3740 2.0979 -1.1065 5 6 2.7753 3.3313 -0.7349 6 6 2.6735 3.4129 0.6696 7 6 2.1885 2.1718 1.1169 8 6 1.9940 1.9594 2.4764 9 6 2.2599 2.9556 3.3997 10 6 2.7316 4.1893 3.0130 11 6 2.9546 4.4634 1.6498 12 6 3.4356 5.7189 1.2389 13 1 3.2442 6.0685 0.2351 14 6 4.1630 6.5161 2.1311 15 7 4.6926 5.9832 3.2021 16 14 4.3773 8.3406 1.7922 17 1 3.6864 8.6932 0.5258 18 1 3.7916 9.1237 2.9097 19 1 5.8235 8.6553 1.6718 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.3394 1.7336 -2.1226 26 1 3.1140 4.1161 -1.3950 27 1 1.6247 1.0035 2.8174 28 1 2.0936 2.7599 4.4487 29 1 2.9308 4.9479 3.7556 30 1 5.1962 6.5355 3.8204 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260583675.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = 32.402387 kcal Electronic energy + Delta-G solvation = -13752.017420 eV Core-core repulsion = 11511.555252 eV Total energy + Delta-G solvation = -2240.462168 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72393 -37.64402 -35.27648 -34.55810 -31.65891 -29.40424 -29.35650 -26.79666 -24.25936 -22.84441 -21.72010 -20.87195 -18.75559 -17.67887 -16.78401 -16.58338 -15.67115 -15.57284 -15.11680 -14.68673 -14.40656 -13.69387 -13.47530 -13.26703 -12.99239 -12.87104 -12.75183 -12.67080 -12.09930 -12.07258 -11.71768 -11.58213 -11.19483 -11.03089 -9.97537 -8.76341 -8.59741 -8.32237 -6.18815 0.71449 1.30902 1.38617 1.54287 1.57807 2.19357 2.21949 2.28824 2.75519 3.82046 3.94177 4.21198 4.27745 4.44778 4.47680 4.66628 4.77149 4.77656 4.94777 5.01625 5.13812 5.26060 5.34037 5.41224 5.58611 5.62275 5.95728 6.21612 6.31941 6.35678 6.47429 6.79493 6.94061 6.98054 7.13863 8.28503 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.047961 B = 0.008552 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.666144 B = 3273.231412 C = 3705.132368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.482 5.482 4 C -0.001 4.001 5 C -0.206 4.206 6 C -0.221 4.221 7 C 0.104 3.896 8 C -0.277 4.277 9 C -0.067 4.067 10 C -0.261 4.261 11 C 0.120 3.880 12 C -0.472 4.472 13 H 0.076 0.924 14 C 0.032 3.968 15 N -0.810 5.810 16 Si 0.988 3.012 17 H -0.257 1.257 18 H -0.261 1.261 19 H -0.262 1.262 20 H 0.037 0.963 21 H 0.058 0.942 22 H 0.099 0.901 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.196 0.804 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 -6.351 -5.404 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.165 5.165 4 C -0.125 4.125 5 C -0.231 4.231 6 C -0.225 4.225 7 C -0.003 4.003 8 C -0.300 4.300 9 C -0.087 4.087 10 C -0.282 4.282 11 C 0.117 3.883 12 C -0.500 4.500 13 H 0.095 0.905 14 C -0.184 4.184 15 N -0.434 5.434 16 Si 0.807 3.193 17 H -0.180 1.180 18 H -0.186 1.186 19 H -0.187 1.187 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.117 0.883 23 H 0.131 0.869 24 H 0.097 0.903 25 H 0.213 0.787 26 H 0.145 0.855 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.006 -6.670 -5.246 9.384 hybrid contribution 0.293 0.862 0.295 0.957 sum -3.713 -5.808 -4.952 8.487 Atomic orbital electron populations 1.22121 0.94314 1.03633 1.01807 1.21880 0.95681 0.79332 1.04654 1.44107 1.55855 1.12252 1.04307 1.21994 1.06339 0.92068 0.92140 1.20580 1.10622 0.98351 0.93595 1.19739 1.13406 0.94777 0.94605 1.18259 1.02028 0.90948 0.89037 1.19253 1.20679 1.00572 0.89465 1.20508 0.97255 0.93287 0.97623 1.20859 1.13469 0.98038 0.95829 1.18522 0.87491 0.91093 0.91171 1.19746 1.29505 1.01106 0.99659 0.90549 1.26930 0.92395 1.05617 0.93483 1.69924 1.23074 1.39479 1.10939 0.85086 0.79106 0.75255 0.79826 1.18026 1.18592 1.18654 0.94339 0.92320 0.88261 0.86863 0.90309 0.78690 0.85517 0.87821 0.87319 0.88244 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.10 2.78 6.78 86.38 0.59 3.36 16 3 N -0.48 -18.46 2.79 -515.66 -1.44 -19.89 16 4 C 0.00 -0.02 11.34 83.20 0.94 0.92 16 5 C -0.21 -9.49 10.74 22.20 0.24 -9.25 16 6 C -0.22 -11.94 6.21 -19.90 -0.12 -12.07 16 7 C 0.10 5.08 6.82 38.93 0.27 5.34 16 8 C -0.28 -13.32 9.96 22.48 0.22 -13.10 16 9 C -0.07 -3.43 9.94 22.17 0.22 -3.21 16 10 C -0.26 -14.93 8.71 22.76 0.20 -14.73 16 11 C 0.12 7.07 5.73 -19.94 -0.11 6.95 16 12 C -0.47 -26.81 9.01 23.28 0.21 -26.60 16 13 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 14 C 0.03 1.69 5.15 85.28 0.44 2.13 16 15 N -0.81 -43.76 10.95 21.84 0.24 -43.52 16 16 Si 0.99 38.92 29.60 68.60 2.03 40.96 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.11 2.20 8.12 -2.38 -0.02 2.18 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.20 5.11 8.06 -2.91 -0.02 5.09 16 26 H 0.13 5.52 8.06 -2.91 -0.02 5.49 16 27 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.10 5.85 6.16 -2.91 -0.02 5.84 16 30 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -67.73 260.57 5.77 -61.95 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 1.12 Total: 23.76 kcal Atomic # 6 Polarization: -67.07 SS G_CDS: 3.82 Total: -63.25 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -1.20 Total: -63.42 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.73 5.77 -61.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583675.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.357 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds