Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36831 * 125.06376 * 2 1 4 4 C 1.34242 * 109.92845 * 180.18819 * 3 2 1 5 5 C 1.46491 * 106.99712 * 359.56769 * 4 3 2 6 6 C 1.39630 * 134.03245 * 180.28525 * 5 4 3 7 7 C 1.36620 * 119.76456 * 179.97438 * 6 5 4 8 8 C 1.38831 * 120.52738 * 0.02562 * 7 6 5 9 9 C 1.37747 * 120.67058 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.11434 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46895 * 265.00184 * 10 9 8 12 12 H 1.07997 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99691 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99786 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00196 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47649 * 89.99828 * 15 13 11 17 17 H 1.48503 * 109.47269 * 210.00245 * 15 13 11 18 18 H 1.48504 * 109.47141 * 329.99757 * 15 13 11 19 19 C 1.37685 * 125.06153 * 179.70198 * 2 1 3 20 20 H 1.09001 * 109.46999 * 270.30178 * 1 2 3 21 21 H 1.09007 * 109.46697 * 30.29663 * 1 2 3 22 22 H 1.08996 * 109.47255 * 150.30066 * 1 2 3 23 23 H 1.07993 * 125.03769 * 0.04135 * 3 2 1 24 24 H 1.08002 * 126.50514 * 179.83712 * 4 3 2 25 25 H 1.07997 * 120.11660 * 359.95483 * 6 5 4 26 26 H 1.08003 * 119.73923 * 180.02562 * 7 6 5 27 27 H 1.08005 * 119.66477 * 180.02562 * 8 7 6 28 28 H 1.08999 * 109.46831 * 24.99729 * 10 9 8 29 29 H 1.08999 * 109.46838 * 144.99987 * 10 9 8 30 30 H 0.97008 * 119.99548 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0041 5 6 3.5946 -0.6946 0.0035 6 6 4.6294 -1.6320 0.0088 7 6 4.3360 -2.9663 0.0162 8 6 3.0165 -3.3981 0.0180 9 6 1.9802 -2.4907 0.0130 10 6 0.5526 -2.9733 0.0156 11 6 0.0371 -3.0248 -1.3995 12 1 0.6789 -2.7365 -2.2189 13 6 -1.2539 -3.4400 -1.6483 14 7 -1.7039 -3.4845 -2.8832 15 14 -2.3643 -3.9381 -0.2311 16 1 -3.1057 -2.7484 0.2588 17 1 -3.3297 -4.9661 -0.6963 18 1 -1.5401 -4.4961 0.8711 19 6 2.2559 -1.1270 0.0059 20 1 -0.3633 0.0054 1.0277 21 1 -0.3633 0.8874 -0.5185 22 1 -0.3633 -0.8926 -0.5091 23 1 1.8835 2.1354 0.0006 24 1 4.3938 1.4397 -0.0076 25 1 5.6582 -1.3034 0.0066 26 1 5.1368 -3.6910 0.0207 27 1 2.8004 -4.4563 0.0244 28 1 0.5067 -3.9696 0.4554 29 1 -0.0612 -2.2889 0.6012 30 1 -2.6123 -3.7763 -3.0582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260603909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = 56.155496 kcal Electronic energy + Delta-G solvation = -13960.609057 eV Core-core repulsion = 11721.176901 eV Total energy + Delta-G solvation = -2239.432156 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.70962 -36.55266 -33.98789 -32.10345 -30.49021 -28.32630 -27.86722 -25.28790 -22.86928 -21.22560 -20.86122 -19.00482 -16.86644 -16.18596 -15.73668 -14.74178 -14.68626 -14.19028 -13.66649 -13.14914 -12.82938 -12.35289 -12.24631 -12.13913 -11.91821 -11.42793 -11.11414 -10.94157 -10.66206 -10.33466 -10.04658 -9.81124 -9.42824 -8.70519 -8.68191 -7.54511 -6.85843 -6.16425 -4.16076 1.83269 2.32657 3.18227 3.27560 3.29138 3.32407 3.49317 4.31775 4.61465 5.13430 5.22059 5.33961 5.48694 5.67493 5.75134 5.79233 5.98904 6.14091 6.24232 6.41467 6.44201 6.49398 6.74411 6.85475 6.99138 7.24503 7.35323 7.42820 7.55988 7.58707 7.90191 7.95854 8.42915 8.91332 9.42879 10.95893 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.010710 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.675680 B = 2613.767651 C = 3089.302111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.472 5.472 3 C 0.044 3.956 4 C -0.221 4.221 5 C -0.114 4.114 6 C -0.103 4.103 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.036 4.036 10 C 0.012 3.988 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.871 3.129 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.103 3.897 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.125 0.875 23 H 0.160 0.840 24 H 0.138 0.862 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.029 0.971 29 H 0.021 0.979 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 6.147 7.127 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.153 5.153 3 C -0.083 4.083 4 C -0.247 4.247 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.159 4.159 8 C -0.139 4.139 9 C -0.038 4.038 10 C -0.025 4.025 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.533 5.533 15 Si 0.698 3.302 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.003 4.003 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.143 0.857 23 H 0.177 0.823 24 H 0.155 0.845 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.833 6.126 7.006 10.984 hybrid contribution -0.772 -0.183 0.519 0.948 sum 5.061 5.943 7.526 10.843 Atomic orbital electron populations 1.22460 0.77000 1.06668 1.02344 1.43775 1.06124 1.04070 1.61356 1.21698 0.90700 0.91050 1.04845 1.21489 0.95526 0.92962 1.14675 1.19160 0.92363 0.93244 1.07086 1.19985 0.96995 0.92153 1.03029 1.20510 0.96209 0.95154 1.04057 1.20648 0.91527 0.98840 1.02933 1.19291 0.97529 0.88898 0.98058 1.18890 0.88722 0.96521 0.98412 1.20940 0.98107 1.45007 0.90951 0.90779 1.25015 0.97819 0.94865 0.95413 1.69906 1.17196 1.47232 1.18939 0.86907 0.80898 0.79087 0.83330 1.20100 1.21050 1.18774 1.18133 0.89424 0.88122 1.04647 0.92497 0.91093 0.85659 0.82310 0.84453 0.87194 0.87010 0.86303 0.95256 0.96129 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 9.80 59.85 0.59 1.59 16 2 N -0.47 -9.06 3.18 -121.80 -0.39 -9.44 16 3 C 0.04 0.71 11.29 -16.73 -0.19 0.52 16 4 C -0.22 -3.67 11.08 -37.67 -0.42 -4.08 16 5 C -0.11 -2.22 6.37 -105.14 -0.67 -2.89 16 6 C -0.10 -1.82 10.05 -39.65 -0.40 -2.22 16 7 C -0.14 -2.49 9.97 -39.95 -0.40 -2.88 16 8 C -0.12 -2.42 9.65 -39.54 -0.38 -2.80 16 9 C -0.04 -0.80 5.08 -104.47 -0.53 -1.33 16 10 C 0.01 0.28 3.48 -29.03 -0.10 0.18 16 11 C -0.51 -14.09 8.08 -34.44 -0.28 -14.37 16 12 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 15 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 19 C 0.10 2.20 6.74 -83.99 -0.57 1.63 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 22 H 0.13 2.68 4.49 -51.93 -0.23 2.45 16 23 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 24 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 28 H 0.03 0.70 7.11 -51.93 -0.37 0.33 16 29 H 0.02 0.47 5.36 -51.93 -0.28 0.20 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 252.23 15.07 3.80 3.80 Total: -1.00 -30.73 252.23 -7.35 -38.08 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.43 Total: 2.26 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.44 Total: -24.79 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.39 Total: -35.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.73 -7.35 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.233 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds