Wall clock time and date at job start Mon Mar 30 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36831 * 125.06376 * 2 1 4 4 C 1.34242 * 109.92845 * 180.18819 * 3 2 1 5 5 C 1.46491 * 106.99712 * 359.56769 * 4 3 2 6 6 C 1.39630 * 134.03245 * 180.28525 * 5 4 3 7 7 C 1.36620 * 119.76456 * 179.97438 * 6 5 4 8 8 C 1.38831 * 120.52738 * 0.02562 * 7 6 5 9 9 C 1.37747 * 120.67058 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.11434 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46895 * 265.00184 * 10 9 8 12 12 H 1.07997 * 120.00219 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99691 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99786 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00196 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47649 * 89.99828 * 15 13 11 17 17 H 1.48503 * 109.47269 * 210.00245 * 15 13 11 18 18 H 1.48504 * 109.47141 * 329.99757 * 15 13 11 19 19 C 1.37685 * 125.06153 * 179.70198 * 2 1 3 20 20 H 1.09001 * 109.46999 * 270.30178 * 1 2 3 21 21 H 1.09007 * 109.46697 * 30.29663 * 1 2 3 22 22 H 1.08996 * 109.47255 * 150.30066 * 1 2 3 23 23 H 1.07993 * 125.03769 * 0.04135 * 3 2 1 24 24 H 1.08002 * 126.50514 * 179.83712 * 4 3 2 25 25 H 1.07997 * 120.11660 * 359.95483 * 6 5 4 26 26 H 1.08003 * 119.73923 * 180.02562 * 7 6 5 27 27 H 1.08005 * 119.66477 * 180.02562 * 8 7 6 28 28 H 1.08999 * 109.46831 * 24.99729 * 10 9 8 29 29 H 1.08999 * 109.46838 * 144.99987 * 10 9 8 30 30 H 0.97008 * 119.99548 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0041 5 6 3.5946 -0.6946 0.0035 6 6 4.6294 -1.6320 0.0088 7 6 4.3360 -2.9663 0.0162 8 6 3.0165 -3.3981 0.0180 9 6 1.9802 -2.4907 0.0130 10 6 0.5526 -2.9733 0.0156 11 6 0.0371 -3.0248 -1.3995 12 1 0.6789 -2.7365 -2.2189 13 6 -1.2539 -3.4400 -1.6483 14 7 -1.7039 -3.4845 -2.8832 15 14 -2.3643 -3.9381 -0.2311 16 1 -3.1057 -2.7484 0.2588 17 1 -3.3297 -4.9661 -0.6963 18 1 -1.5401 -4.4961 0.8711 19 6 2.2559 -1.1270 0.0059 20 1 -0.3633 0.0054 1.0277 21 1 -0.3633 0.8874 -0.5185 22 1 -0.3633 -0.8926 -0.5091 23 1 1.8835 2.1354 0.0006 24 1 4.3938 1.4397 -0.0076 25 1 5.6582 -1.3034 0.0066 26 1 5.1368 -3.6910 0.0207 27 1 2.8004 -4.4563 0.0244 28 1 0.5067 -3.9696 0.4554 29 1 -0.0612 -2.2889 0.6012 30 1 -2.6123 -3.7763 -3.0582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260603909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:52 Heat of formation + Delta-G solvation = 38.527449 kcal Electronic energy + Delta-G solvation = -13961.373467 eV Core-core repulsion = 11721.176901 eV Total energy + Delta-G solvation = -2240.196566 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.10253 -37.99920 -35.78701 -33.94481 -32.02293 -29.77078 -29.54670 -26.78719 -24.67424 -22.69557 -22.35070 -20.43833 -19.00667 -17.59729 -17.14936 -16.43353 -16.10808 -15.88218 -15.21554 -14.92349 -14.31139 -14.07851 -13.69219 -13.54733 -13.42087 -13.00825 -12.80751 -12.54995 -12.22115 -11.97066 -11.78852 -11.65595 -11.29990 -10.81714 -10.20632 -8.97469 -8.34501 -8.27275 -6.37446 0.39317 0.86079 1.31340 1.35817 1.47049 1.94790 2.15324 2.31227 3.00290 3.13076 3.93323 4.05322 4.15073 4.23517 4.36575 4.45984 4.62540 4.70994 4.86077 4.88361 4.98048 5.06602 5.12626 5.27170 5.33327 5.52706 5.78592 5.88595 5.99995 6.10460 6.24780 6.47523 6.60326 6.68776 7.25147 8.83804 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.010710 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.675680 B = 2613.767651 C = 3089.302111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.486 5.486 3 C 0.047 3.953 4 C -0.224 4.224 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.143 4.143 8 C -0.133 4.133 9 C -0.076 4.076 10 C 0.023 3.977 11 C -0.508 4.508 12 H 0.020 0.980 13 C 0.016 3.984 14 N -0.944 5.944 15 Si 0.941 3.059 16 H -0.256 1.256 17 H -0.283 1.283 18 H -0.251 1.251 19 C 0.068 3.932 20 H 0.075 0.925 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.172 0.828 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.121 0.879 28 H 0.026 0.974 29 H 0.030 0.970 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 7.476 8.884 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.168 5.168 3 C -0.079 4.079 4 C -0.249 4.249 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.162 4.162 8 C -0.153 4.153 9 C -0.079 4.079 10 C -0.014 4.014 11 C -0.545 4.545 12 H 0.038 0.962 13 C -0.182 4.182 14 N -0.584 5.584 15 Si 0.764 3.236 16 H -0.181 1.181 17 H -0.209 1.209 18 H -0.175 1.175 19 C -0.038 4.038 20 H 0.094 0.906 21 H 0.117 0.883 22 H 0.102 0.898 23 H 0.220 0.780 24 H 0.189 0.811 25 H 0.163 0.837 26 H 0.164 0.836 27 H 0.139 0.861 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.722 7.471 8.775 13.341 hybrid contribution -0.922 -0.529 -0.100 1.068 sum 5.800 6.942 8.675 12.533 Atomic orbital electron populations 1.22410 0.76852 1.05912 1.03343 1.44031 1.06584 1.04447 1.61742 1.22464 0.90455 0.91958 1.03023 1.21929 0.96924 0.91858 1.14185 1.19725 0.91975 0.95243 1.07025 1.20457 0.98415 0.91861 1.00967 1.20853 0.95869 0.96263 1.03234 1.20893 0.92619 0.98820 1.02945 1.19335 0.96929 0.90327 1.01275 1.18689 0.90417 0.96494 0.95771 1.20946 0.97600 1.44428 0.91573 0.96171 1.25887 0.99358 0.94699 0.98222 1.70059 1.17923 1.48900 1.21545 0.85797 0.78696 0.79318 0.79822 1.18084 1.20860 1.17472 1.18420 0.91133 0.88380 1.05883 0.90622 0.88332 0.89765 0.78002 0.81095 0.83677 0.83617 0.86131 0.95562 0.95225 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.94 9.80 127.77 1.25 3.19 16 2 N -0.49 -18.16 3.18 -539.27 -1.71 -19.87 16 3 C 0.05 1.37 11.29 83.00 0.94 2.30 16 4 C -0.22 -6.76 11.08 23.51 0.26 -6.50 16 5 C -0.13 -5.04 6.37 -20.20 -0.13 -5.17 16 6 C -0.10 -3.27 10.05 22.23 0.22 -3.04 16 7 C -0.14 -4.86 9.97 22.03 0.22 -4.64 16 8 C -0.13 -5.43 9.65 22.30 0.22 -5.21 16 9 C -0.08 -3.49 5.08 -19.77 -0.10 -3.59 16 10 C 0.02 1.14 3.48 29.10 0.10 1.24 16 11 C -0.51 -29.24 8.08 25.60 0.21 -29.03 16 12 H 0.02 1.33 7.98 -2.91 -0.02 1.31 16 13 C 0.02 0.92 5.47 84.65 0.46 1.38 16 14 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 15 Si 0.94 42.77 27.47 68.60 1.88 44.65 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 19 C 0.07 2.91 6.74 39.03 0.26 3.17 16 20 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 21 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 22 H 0.08 3.68 4.49 -2.39 -0.01 3.67 16 23 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 24 H 0.17 3.86 8.06 -2.91 -0.02 3.83 16 25 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 26 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.03 1.26 7.11 -2.39 -0.02 1.25 16 29 H 0.03 1.37 5.36 -2.39 -0.01 1.36 16 30 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -69.70 252.23 5.46 -64.24 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.07 Total: 14.74 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 3.91 Total: -45.89 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.41 Total: -77.74 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -69.70 5.46 -64.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.767 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds