Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00001 * 2 1 4 4 H 1.48508 * 109.47123 * 269.99925 * 3 2 1 5 5 H 1.48503 * 109.47138 * 29.99400 * 3 2 1 6 6 H 1.48489 * 109.47259 * 149.99935 * 3 2 1 7 7 C 1.37869 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99916 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99946 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.46920 * 60.00636 * 9 7 2 11 11 C 1.52990 * 109.47101 * 299.99988 * 9 7 2 12 12 C 1.53003 * 109.46989 * 176.01259 * 11 9 7 13 13 O 1.42901 * 109.47351 * 185.02709 * 12 11 9 14 14 N 1.46902 * 109.46746 * 180.02562 * 9 7 2 15 15 C 1.47008 * 111.00242 * 59.30423 * 14 9 7 16 16 C 1.53096 * 109.25876 * 177.60777 * 15 14 9 17 17 O 1.43014 * 109.26423 * 56.84375 * 16 15 14 18 18 C 1.43013 * 113.73906 * 301.33761 * 17 16 15 19 19 C 1.47016 * 110.99914 * 295.66325 * 14 9 7 20 20 H 0.97002 * 120.00111 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47727 * 296.01284 * 11 9 7 22 22 H 1.08999 * 109.47312 * 56.01419 * 11 9 7 23 23 H 1.08996 * 109.47314 * 305.03637 * 12 11 9 24 24 H 1.09006 * 109.46844 * 65.03512 * 12 11 9 25 25 H 0.96697 * 114.00009 * 180.02562 * 13 12 11 26 26 H 1.09002 * 109.50803 * 57.66911 * 15 14 9 27 27 H 1.08998 * 109.50825 * 297.53641 * 15 14 9 28 28 H 1.09003 * 109.50958 * 176.78506 * 16 15 14 29 29 H 1.09010 * 109.50459 * 296.86769 * 16 15 14 30 30 H 1.09000 * 109.50495 * 178.60041 * 18 17 16 31 31 H 1.09002 * 109.50467 * 298.72968 * 18 17 16 32 32 H 1.09001 * 109.50192 * 62.46659 * 19 14 9 33 33 H 1.08995 * 109.54500 * 302.35194 * 19 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8752 -0.6796 0.8895 11 6 4.0210 -0.4736 -1.2499 12 6 5.5478 -0.3861 -1.2014 13 8 6.0160 0.3877 -2.3078 14 7 4.0011 -2.5790 0.0001 15 6 3.5157 -3.3095 -1.1797 16 6 4.0965 -4.7260 -1.1707 17 8 3.7391 -5.3748 0.0527 18 6 4.1965 -4.6905 1.2222 19 6 3.6168 -3.2735 1.2375 20 1 -0.4850 0.8401 -0.0004 21 1 3.7169 -1.0276 -2.1380 22 1 3.6005 0.5313 -1.2869 23 1 5.8551 0.0889 -0.2697 24 1 5.9710 -1.3892 -1.2546 25 1 6.9775 0.4847 -2.3409 26 1 3.8334 -2.7916 -2.0847 27 1 2.4274 -3.3623 -1.1528 28 1 3.6943 -5.2897 -2.0126 29 1 5.1823 -4.6748 -1.2525 30 1 3.8666 -5.2284 2.1110 31 1 5.2852 -4.6381 1.2108 32 1 2.5300 -3.3257 1.3030 33 1 4.0076 -2.7297 2.0974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -112.484584 kcal Electronic energy + Delta-G solvation = -15578.096542 eV Core-core repulsion = 13024.042683 eV Total energy + Delta-G solvation = -2554.053858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59837 -38.32747 -37.00230 -34.53718 -32.78735 -31.92345 -28.94634 -27.17799 -24.86807 -23.99182 -22.16304 -20.99639 -18.94298 -18.06548 -17.80878 -16.91200 -16.47820 -16.21060 -15.87611 -15.52294 -15.47956 -14.85779 -14.49453 -14.22889 -13.49197 -13.32697 -13.02669 -12.76699 -12.41509 -12.28102 -12.17064 -11.79897 -11.57348 -11.45601 -11.22445 -10.86130 -10.70880 -10.50150 -9.08050 -8.38134 -6.43654 1.28382 1.30002 1.39776 2.23913 2.94343 2.96300 3.18452 3.53405 4.08954 4.09883 4.27024 4.31652 4.37672 4.40011 4.49801 4.59960 4.67392 4.76033 4.85269 4.94665 5.00145 5.09242 5.16352 5.24827 5.34494 5.45888 6.02573 6.23306 6.26220 6.33121 6.63951 7.00184 7.24422 8.78230 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.012971 C = 0.009738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.279732 B = 2158.200829 C = 2874.662466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.540 4.540 8 H 0.036 0.964 9 C 0.189 3.811 10 H 0.041 0.959 11 C -0.118 4.118 12 C 0.090 3.910 13 O -0.598 6.598 14 N -0.514 5.514 15 C 0.020 3.980 16 C 0.071 3.929 17 O -0.408 6.408 18 C 0.071 3.929 19 C 0.020 3.980 20 H 0.266 0.734 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.395 0.605 26 H 0.083 0.917 27 H 0.012 0.988 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.013 0.987 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 -4.735 -0.252 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.166 1.166 7 C -0.578 4.578 8 H 0.054 0.946 9 C 0.080 3.920 10 H 0.059 0.941 11 C -0.156 4.156 12 C 0.012 3.988 13 O -0.406 6.406 14 N -0.238 5.238 15 C -0.109 4.109 16 C -0.006 4.006 17 O -0.328 6.328 18 C -0.005 4.005 19 C -0.109 4.109 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.244 0.756 26 H 0.102 0.898 27 H 0.031 0.969 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.609 -4.774 -0.377 14.427 hybrid contribution -0.870 1.235 0.107 1.515 sum 12.739 -3.539 -0.270 13.224 Atomic orbital electron populations 1.70055 1.08210 1.28080 1.51990 1.25810 0.95359 1.02850 0.93909 0.85873 0.79279 0.79029 0.78335 1.20172 1.22500 1.16643 1.21762 0.92258 0.92989 1.50827 0.94595 1.19517 0.91294 0.87234 0.93928 0.94086 1.21916 0.94842 0.99112 0.99731 1.22102 0.93689 0.95097 0.87871 1.86450 1.28751 1.75541 1.49879 1.62710 1.57010 1.02084 1.01975 1.22700 0.97421 0.95718 0.95055 1.22760 1.00052 0.90939 0.86848 1.87898 1.79553 1.50113 1.15187 1.22768 0.99141 0.90373 0.88257 1.22684 0.98088 0.96281 0.93807 0.92492 0.92369 0.94374 0.93674 0.91183 0.75570 0.89842 0.96920 0.87462 0.90805 0.87170 0.90770 0.96826 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 13.96 21.44 0.30 -58.93 16 2 C 0.02 1.12 5.45 84.65 0.46 1.58 16 3 Si 0.95 45.61 24.41 68.60 1.67 47.28 16 4 H -0.27 -13.17 6.84 99.48 0.68 -12.49 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.24 -10.66 6.53 99.48 0.65 -10.01 16 7 C -0.54 -30.20 7.69 25.60 0.20 -30.01 16 8 H 0.04 2.28 6.04 -2.91 -0.02 2.26 16 9 C 0.19 8.52 1.36 44.17 0.06 8.58 16 10 H 0.04 1.88 7.19 -2.39 -0.02 1.86 16 11 C -0.12 -5.00 4.34 30.59 0.13 -4.87 16 12 C 0.09 2.95 6.86 71.98 0.49 3.45 16 13 O -0.60 -18.43 13.66 -148.98 -2.04 -20.46 16 14 N -0.51 -19.83 4.22 -874.39 -3.69 -23.52 16 15 C 0.02 0.74 4.99 86.31 0.43 1.17 16 16 C 0.07 2.10 7.01 72.01 0.50 2.60 16 17 O -0.41 -13.45 10.83 -148.98 -1.61 -15.06 16 18 C 0.07 2.05 7.01 72.02 0.50 2.56 16 19 C 0.02 0.74 5.37 86.31 0.46 1.20 16 20 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 21 H 0.06 2.53 6.16 -2.39 -0.01 2.51 16 22 H 0.04 1.77 3.22 -2.39 -0.01 1.76 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 2.07 7.87 -2.38 -0.02 2.05 16 25 H 0.39 7.34 9.12 -74.06 -0.68 6.66 16 26 H 0.08 3.03 6.12 -2.39 -0.01 3.02 16 27 H 0.01 0.58 6.51 -2.39 -0.02 0.56 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.01 0.60 6.82 -2.39 -0.02 0.59 16 33 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -69.16 253.82 -1.77 -70.92 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.35 Total: 13.50 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 3.25 Total: -13.73 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -3.39 Total: -82.45 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -3.65 Total: -35.52 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -69.16 -1.77 -70.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.562 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds