Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47097 * 60.00116 * 3 2 1 6 6 H 1.48501 * 109.47568 * 300.00084 * 3 2 1 7 7 C 1.37875 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 183.66670 * 7 2 1 9 9 C 1.50706 * 119.99950 * 3.67029 * 7 2 1 10 10 O 1.42902 * 109.50057 * 304.45747 * 9 7 2 11 11 C 1.53120 * 109.50265 * 184.38161 * 9 7 2 12 12 C 1.53122 * 109.15560 * 182.44210 * 11 9 7 13 13 C 1.53036 * 109.31020 * 57.59806 * 12 11 9 14 14 N 1.46846 * 109.52052 * 300.83526 * 13 12 11 15 15 C 1.46899 * 111.00193 * 185.84113 * 14 13 12 16 16 C 1.53001 * 109.47158 * 52.10769 * 15 14 13 17 17 O 1.42906 * 109.46878 * 63.22431 * 16 15 14 18 18 C 1.46846 * 111.19897 * 61.74696 * 14 13 12 19 19 H 0.97006 * 120.00417 * 181.69444 * 1 2 3 20 20 H 0.96694 * 114.00278 * 295.84122 * 10 9 7 21 21 H 1.09006 * 109.52216 * 302.30567 * 11 9 7 22 22 H 1.09002 * 109.52394 * 62.49490 * 11 9 7 23 23 H 1.08994 * 109.47335 * 297.65419 * 12 11 9 24 24 H 1.09010 * 109.50278 * 177.55344 * 12 11 9 25 25 H 1.08999 * 109.46299 * 180.82789 * 13 12 11 26 26 H 1.09000 * 109.45897 * 60.84902 * 13 12 11 27 27 H 1.08999 * 109.47710 * 172.10894 * 15 14 13 28 28 H 1.09002 * 109.47040 * 292.11100 * 15 14 13 29 29 H 1.09001 * 109.47365 * 183.22491 * 16 15 14 30 30 H 1.09003 * 109.47535 * 303.22815 * 16 15 14 31 31 H 0.96695 * 113.99829 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46530 * 178.23900 * 18 14 13 33 33 H 1.08998 * 109.45577 * 58.26152 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 1.2125 6 1 1.8904 2.3965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0828 -1.1950 0.0593 9 6 1.2533 -2.4978 -0.0847 10 8 0.2945 -2.5651 0.9729 11 6 2.2374 -3.6639 0.0426 12 6 1.4747 -4.9835 -0.1050 13 6 0.7493 -5.0008 -1.4524 14 7 -0.1807 -3.8666 -1.5236 15 6 -0.9947 -3.9290 -2.7448 16 6 -1.6503 -5.3074 -2.8509 17 8 -2.5413 -5.4970 -1.7498 18 6 0.5342 -2.5871 -1.4326 19 1 -0.4851 -0.8397 0.0248 20 1 0.6849 -2.5793 1.8574 21 1 2.9922 -3.5906 -0.7404 22 1 2.7198 -3.6285 1.0194 23 1 0.7469 -5.0746 0.7013 24 1 2.1762 -5.8165 -0.0587 25 1 0.1935 -5.9329 -1.5537 26 1 1.4788 -4.9234 -2.2585 27 1 -1.7675 -3.1613 -2.7062 28 1 -0.3590 -3.7612 -3.6142 29 1 -2.2078 -5.3737 -3.7851 30 1 -0.8801 -6.0786 -2.8318 31 1 -2.9930 -6.3520 -1.7522 32 1 -0.1777 -1.7663 -1.5197 33 1 1.2647 -2.5213 -2.2389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = -97.191813 kcal Electronic energy + Delta-G solvation = -15685.290121 eV Core-core repulsion = 13131.899407 eV Total energy + Delta-G solvation = -2553.390714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.78434 -36.71703 -34.81853 -32.36985 -31.83607 -29.05935 -28.07543 -24.64868 -23.54840 -21.80505 -20.42098 -18.78918 -17.31665 -17.16009 -15.69708 -15.14406 -14.42961 -13.94772 -13.72141 -13.56705 -13.42760 -12.94054 -12.40316 -12.29923 -11.63893 -11.48110 -11.09636 -10.96525 -10.73381 -10.58347 -10.17759 -10.07507 -10.02255 -9.80713 -9.63751 -8.94680 -8.41071 -7.80856 -7.45441 -6.18507 -4.09506 3.45384 3.48262 3.62061 4.42659 4.54812 4.64276 5.26490 5.38709 5.42890 5.47251 5.58213 5.67379 5.80899 5.90145 5.98289 6.14535 6.23706 6.37402 6.40345 6.58264 6.64758 6.79397 6.84140 7.18181 7.58255 7.77321 7.85809 7.95311 8.20228 8.44515 8.99633 9.30445 9.78237 11.16544 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040395 B = 0.009763 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.989134 B = 2867.405478 C = 3174.305108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.646 4.646 8 H 0.049 0.951 9 C 0.246 3.754 10 O -0.559 6.559 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.052 3.948 16 C 0.078 3.922 17 O -0.551 6.551 18 C 0.077 3.923 19 H 0.297 0.703 20 H 0.349 0.651 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.016 0.984 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.366 0.634 32 H 0.084 0.916 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -10.021 -4.600 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.172 4.172 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.684 4.684 8 H 0.067 0.933 9 C 0.206 3.794 10 O -0.363 6.363 11 C -0.173 4.173 12 C -0.150 4.150 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.076 4.076 16 C 0.000 4.000 17 O -0.354 6.354 18 C -0.051 4.051 19 H 0.112 0.888 20 H 0.193 0.807 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.102 0.898 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.782 -7.819 -4.599 9.105 hybrid contribution 1.158 -2.128 -0.537 2.482 sum 0.377 -9.947 -5.137 11.202 Atomic orbital electron populations 1.70545 1.06852 1.33634 1.42246 1.25673 0.96580 1.02065 0.92889 0.83628 0.74534 0.75386 0.76957 1.21725 1.21387 1.21384 1.22430 0.94333 0.92315 1.59325 0.93300 1.18808 0.84672 0.91462 0.84411 1.86493 1.37130 1.96866 1.15763 1.22215 0.98802 0.95698 1.00556 1.21518 0.98543 0.97296 0.97600 1.22074 0.93580 0.94508 0.96832 1.61985 1.24203 1.03064 1.35076 1.22129 0.97079 0.96537 0.91859 1.22302 0.91938 0.97415 0.88394 1.86740 1.60703 1.39948 1.48048 1.22277 0.96174 0.89498 0.97112 0.88805 0.80715 0.93142 0.92970 0.91050 0.93433 0.91720 0.96549 0.90223 0.94555 0.94122 0.93777 0.78894 0.89784 0.95764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 12.84 55.43 0.71 -26.55 16 2 C 0.04 1.07 5.23 -17.82 -0.09 0.98 16 3 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.65 -18.07 8.22 -34.44 -0.28 -18.35 16 8 H 0.05 1.37 7.75 -52.49 -0.41 0.97 16 9 C 0.25 6.22 0.56 -91.69 -0.05 6.17 16 10 O -0.56 -14.62 10.41 -35.23 -0.37 -14.99 16 11 C -0.13 -2.91 4.90 -26.61 -0.13 -3.04 16 12 C -0.11 -2.11 5.94 -26.65 -0.16 -2.26 16 13 C 0.06 1.07 5.05 -3.83 -0.02 1.06 16 14 N -0.52 -11.00 4.57 -234.67 -1.07 -12.07 16 15 C 0.05 0.94 5.51 -3.82 -0.02 0.92 16 16 C 0.08 1.11 6.70 37.16 0.25 1.35 16 17 O -0.55 -8.61 13.58 -35.23 -0.48 -9.08 16 18 C 0.08 1.88 4.11 -3.83 -0.02 1.86 16 19 H 0.30 9.22 4.77 -40.82 -0.19 9.03 16 20 H 0.35 8.25 9.03 45.56 0.41 8.66 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.07 1.43 7.80 -51.93 -0.41 1.02 16 24 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.06 1.06 5.77 -51.93 -0.30 0.76 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.58 6.00 -51.93 -0.31 0.26 16 31 H 0.37 3.64 9.12 45.56 0.42 4.06 16 32 H 0.08 2.31 5.99 -51.93 -0.31 2.00 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 260.20 15.07 3.92 3.92 Total: -1.00 -32.72 260.20 -6.17 -38.89 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.28 Total: 10.98 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.52 Total: -11.31 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.36 Total: -38.62 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.85 Total: -24.07 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.72 -6.17 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds