Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47097 * 60.00116 * 3 2 1 6 6 H 1.48501 * 109.47568 * 300.00084 * 3 2 1 7 7 C 1.37875 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 183.66670 * 7 2 1 9 9 C 1.50706 * 119.99950 * 3.67029 * 7 2 1 10 10 O 1.42902 * 109.50057 * 304.45747 * 9 7 2 11 11 C 1.53120 * 109.50265 * 184.38161 * 9 7 2 12 12 C 1.53122 * 109.15560 * 182.44210 * 11 9 7 13 13 C 1.53036 * 109.31020 * 57.59806 * 12 11 9 14 14 N 1.46846 * 109.52052 * 300.83526 * 13 12 11 15 15 C 1.46899 * 111.00193 * 185.84113 * 14 13 12 16 16 C 1.53001 * 109.47158 * 52.10769 * 15 14 13 17 17 O 1.42906 * 109.46878 * 63.22431 * 16 15 14 18 18 C 1.46846 * 111.19897 * 61.74696 * 14 13 12 19 19 H 0.97006 * 120.00417 * 181.69444 * 1 2 3 20 20 H 0.96694 * 114.00278 * 295.84122 * 10 9 7 21 21 H 1.09006 * 109.52216 * 302.30567 * 11 9 7 22 22 H 1.09002 * 109.52394 * 62.49490 * 11 9 7 23 23 H 1.08994 * 109.47335 * 297.65419 * 12 11 9 24 24 H 1.09010 * 109.50278 * 177.55344 * 12 11 9 25 25 H 1.08999 * 109.46299 * 180.82789 * 13 12 11 26 26 H 1.09000 * 109.45897 * 60.84902 * 13 12 11 27 27 H 1.08999 * 109.47710 * 172.10894 * 15 14 13 28 28 H 1.09002 * 109.47040 * 292.11100 * 15 14 13 29 29 H 1.09001 * 109.47365 * 183.22491 * 16 15 14 30 30 H 1.09003 * 109.47535 * 303.22815 * 16 15 14 31 31 H 0.96695 * 113.99829 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46530 * 178.23900 * 18 14 13 33 33 H 1.08998 * 109.45577 * 58.26152 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 1.2125 6 1 1.8904 2.3965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0828 -1.1950 0.0593 9 6 1.2533 -2.4978 -0.0847 10 8 0.2945 -2.5651 0.9729 11 6 2.2374 -3.6639 0.0426 12 6 1.4747 -4.9835 -0.1050 13 6 0.7493 -5.0008 -1.4524 14 7 -0.1807 -3.8666 -1.5236 15 6 -0.9947 -3.9290 -2.7448 16 6 -1.6503 -5.3074 -2.8509 17 8 -2.5413 -5.4970 -1.7498 18 6 0.5342 -2.5871 -1.4326 19 1 -0.4851 -0.8397 0.0248 20 1 0.6849 -2.5793 1.8574 21 1 2.9922 -3.5906 -0.7404 22 1 2.7198 -3.6285 1.0194 23 1 0.7469 -5.0746 0.7013 24 1 2.1762 -5.8165 -0.0587 25 1 0.1935 -5.9329 -1.5537 26 1 1.4788 -4.9234 -2.2585 27 1 -1.7675 -3.1613 -2.7062 28 1 -0.3590 -3.7612 -3.6142 29 1 -2.2078 -5.3737 -3.7851 30 1 -0.8801 -6.0786 -2.8318 31 1 -2.9930 -6.3520 -1.7522 32 1 -0.1777 -1.7663 -1.5197 33 1 1.2647 -2.5213 -2.2389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260696575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = -125.430061 kcal Electronic energy + Delta-G solvation = -15686.514624 eV Core-core repulsion = 13131.899407 eV Total energy + Delta-G solvation = -2554.615216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46959 -38.12108 -36.46058 -34.35645 -33.60913 -30.82184 -29.59985 -26.65065 -25.12702 -23.49897 -21.99834 -20.54282 -19.33148 -18.35265 -17.26071 -16.92957 -16.04257 -15.72363 -15.42823 -15.28154 -14.96211 -14.37820 -14.28756 -13.90655 -13.29839 -13.07942 -12.93617 -12.68946 -12.60609 -12.07002 -11.93584 -11.85974 -11.70021 -11.62710 -10.82747 -10.76544 -10.55606 -9.86732 -9.06503 -8.42794 -6.35913 1.52110 1.60398 1.76593 2.57876 2.97659 3.28099 3.46446 3.77577 3.99793 4.04128 4.22397 4.26456 4.32261 4.45217 4.54559 4.57415 4.72521 4.78274 4.82467 4.91690 5.01883 5.06784 5.14222 5.45801 5.68211 5.91259 6.18402 6.29283 6.37109 6.72787 7.04501 7.30594 7.63439 8.88660 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040395 B = 0.009763 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.989134 B = 2867.405478 C = 3174.305108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 1.112 2.888 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.657 4.657 8 H 0.043 0.957 9 C 0.233 3.767 10 O -0.573 6.573 11 C -0.129 4.129 12 C -0.105 4.105 13 C 0.056 3.944 14 N -0.536 5.536 15 C 0.044 3.956 16 C 0.085 3.915 17 O -0.583 6.583 18 C 0.089 3.911 19 H 0.282 0.718 20 H 0.355 0.645 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.391 0.609 32 H 0.044 0.956 33 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -11.602 -5.211 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.695 4.695 8 H 0.061 0.939 9 C 0.193 3.807 10 O -0.377 6.377 11 C -0.167 4.167 12 C -0.143 4.143 13 C -0.071 4.071 14 N -0.261 5.261 15 C -0.084 4.084 16 C 0.007 3.993 17 O -0.390 6.390 18 C -0.039 4.039 19 H 0.096 0.904 20 H 0.199 0.801 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.062 0.938 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -0.029 -9.444 -5.212 10.787 hybrid contribution 0.909 -1.696 -0.348 1.955 sum 0.879 -11.140 -5.560 12.481 Atomic orbital electron populations 1.70662 1.07884 1.32766 1.44796 1.27041 0.96573 1.05791 0.91994 0.83022 0.74276 0.71896 0.77294 1.19905 1.20760 1.20722 1.22811 0.94256 0.94006 1.58395 0.93887 1.18950 0.85275 0.92004 0.84435 1.86473 1.37874 1.96939 1.16401 1.22090 0.98059 0.95897 1.00671 1.21494 0.98651 0.96733 0.97421 1.22200 0.93668 0.94400 0.96818 1.61885 1.24669 1.02225 1.37286 1.22261 0.96454 0.98661 0.91021 1.22265 0.92558 0.95061 0.89371 1.86669 1.61313 1.42211 1.48818 1.21910 0.95051 0.90476 0.96466 0.90433 0.80051 0.93181 0.92728 0.92399 0.89693 0.88849 0.95625 0.92774 0.93271 0.90928 0.91839 0.76061 0.93775 0.96575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.74 12.84 21.45 0.28 -57.47 16 2 C -0.01 -0.61 5.23 84.66 0.44 -0.17 16 3 Si 1.11 51.13 29.90 68.60 2.05 53.18 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.66 -37.16 8.22 25.60 0.21 -36.95 16 8 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 9 C 0.23 11.89 0.56 -11.49 -0.01 11.88 16 10 O -0.57 -30.54 10.41 -148.98 -1.55 -32.09 16 11 C -0.13 -5.44 4.90 30.68 0.15 -5.29 16 12 C -0.11 -3.70 5.94 30.65 0.18 -3.52 16 13 C 0.06 1.93 5.05 86.33 0.44 2.37 16 14 N -0.54 -22.38 4.57 -896.37 -4.09 -26.48 16 15 C 0.04 1.54 5.51 86.30 0.48 2.01 16 16 C 0.09 2.17 6.70 71.98 0.48 2.65 16 17 O -0.58 -16.85 13.58 -148.98 -2.02 -18.88 16 18 C 0.09 4.46 4.11 86.33 0.35 4.82 16 19 H 0.28 18.24 4.77 -92.70 -0.44 17.80 16 20 H 0.35 17.14 9.03 -74.06 -0.67 16.47 16 21 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 22 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.06 2.20 7.80 -2.39 -0.02 2.18 16 24 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.09 2.69 5.77 -2.39 -0.01 2.67 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.38 6.00 -2.39 -0.01 1.37 16 31 H 0.39 6.64 9.12 -74.06 -0.68 5.97 16 32 H 0.04 2.54 5.99 -2.39 -0.01 2.52 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -71.52 260.20 -2.52 -74.04 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.10 Total: 29.88 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 2.73 Total: -22.18 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -3.82 Total: -83.94 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -3.57 Total: -50.97 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -71.52 -2.52 -74.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.392 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds