Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46990 * 2 1 4 4 C 1.36936 * 119.99697 * 94.70245 * 3 2 1 5 5 H 1.08008 * 119.99662 * 213.19846 * 4 3 2 6 6 C 1.38809 * 120.00254 * 33.47410 * 4 3 2 7 7 N 1.31627 * 119.99641 * 22.33814 * 6 4 3 8 8 Si 1.86798 * 120.00296 * 202.33668 * 6 4 3 9 9 H 1.48498 * 109.46952 * 90.00199 * 8 6 4 10 10 H 1.48503 * 109.46941 * 210.00177 * 8 6 4 11 11 H 1.48501 * 109.46718 * 330.00356 * 8 6 4 12 12 C 1.46504 * 120.00389 * 274.69941 * 3 2 1 13 13 H 1.09006 * 109.38527 * 0.02562 * 12 3 2 14 14 C 1.52579 * 109.39283 * 240.20054 * 12 3 2 15 15 C 1.52582 * 110.72727 * 169.17487 * 14 12 3 16 16 C 1.53096 * 109.95373 * 70.67508 * 15 14 12 17 17 S 1.81750 * 108.84115 * 296.97504 * 16 15 14 18 18 C 1.53101 * 109.38840 * 119.80159 * 12 3 2 19 19 H 1.09006 * 109.46992 * 59.99953 * 1 2 3 20 20 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47385 * 299.99704 * 1 2 3 22 22 H 1.09005 * 109.46765 * 240.00139 * 2 1 3 23 23 H 1.08995 * 109.47259 * 120.00420 * 2 1 3 24 24 H 0.96996 * 119.99489 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.22430 * 289.49882 * 14 12 3 26 26 H 1.09004 * 109.22388 * 48.89693 * 14 12 3 27 27 H 1.08995 * 109.39133 * 190.82763 * 15 14 12 28 28 H 1.09000 * 109.39071 * 310.52619 * 15 14 12 29 29 H 1.08991 * 109.57744 * 56.78238 * 16 15 14 30 30 H 1.09003 * 109.57346 * 177.04394 * 16 15 14 31 31 H 1.08999 * 109.57575 * 302.98077 * 18 12 3 32 32 H 1.08998 * 109.57645 * 63.37028 * 18 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3382 1.9943 1.1819 5 1 2.1787 3.0560 1.3000 6 6 2.8726 1.2523 2.2263 7 7 3.4753 0.1084 1.9799 8 14 2.7365 1.8772 3.9814 9 1 1.4817 1.3693 4.5917 10 1 3.9000 1.3970 4.7694 11 1 2.7197 3.3621 3.9781 12 6 2.1645 2.1066 -1.2644 13 1 1.8636 1.4603 -2.0891 14 6 3.6227 2.5167 -1.4476 15 6 3.8645 3.0340 -2.8625 16 6 3.1864 4.3945 -3.0444 17 16 1.3912 4.1858 -2.8527 18 6 1.2726 3.3507 -1.2427 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8491 -0.4098 2.7096 25 1 3.8674 3.3014 -0.7318 26 1 4.2636 1.6537 -1.2671 27 1 4.9362 3.1383 -3.0314 28 1 3.4536 2.3257 -3.5819 29 1 3.5557 5.0903 -2.2911 30 1 3.4067 4.7822 -4.0391 31 1 0.2391 3.0560 -1.0607 32 1 1.6062 4.0255 -0.4544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260883756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -9.660203 kcal Electronic energy + Delta-G solvation = -13299.201338 eV Core-core repulsion = 11192.359150 eV Total energy + Delta-G solvation = -2106.842188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99177 -36.04266 -33.46233 -32.13777 -29.65414 -27.99321 -26.20943 -23.58952 -22.34924 -21.34593 -18.27931 -17.73083 -16.66054 -16.04901 -15.85773 -15.45846 -14.90217 -14.53295 -14.26043 -14.01513 -13.69470 -13.33371 -13.23098 -12.79365 -12.51242 -12.42328 -12.22064 -12.11432 -11.97221 -11.70532 -11.43728 -11.19228 -10.74108 -10.41550 -8.80750 -8.46513 -7.80769 -5.38565 0.93186 1.44272 1.47945 1.54195 1.63273 2.51466 3.24904 3.60978 3.87325 4.04179 4.10884 4.26370 4.39043 4.54974 4.59233 4.70676 4.82673 4.85955 4.90931 4.95267 5.07729 5.16692 5.17902 5.40663 5.50054 5.54421 5.68699 5.87524 6.46481 7.17380 7.87381 8.38237 9.15264 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.010303 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.043172 B = 2716.920702 C = 2930.716051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.135 3.865 3 N -0.592 5.592 4 C -0.251 4.251 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.287 1.287 10 H -0.296 1.296 11 H -0.272 1.272 12 C 0.176 3.824 13 H 0.063 0.937 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.067 4.067 17 S -0.297 6.297 18 C -0.066 4.066 19 H 0.044 0.956 20 H 0.057 0.943 21 H 0.033 0.967 22 H 0.022 0.978 23 H 0.071 0.929 24 H 0.250 0.750 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 5.022 -8.361 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 N -0.313 5.313 4 C -0.381 4.381 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.214 1.214 10 H -0.223 1.223 11 H -0.196 1.196 12 C 0.067 3.933 13 H 0.081 0.919 14 C -0.160 4.160 15 C -0.150 4.150 16 C -0.215 4.215 17 S -0.072 6.072 18 C -0.216 4.216 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.146 5.236 -8.953 10.592 hybrid contribution 0.954 -0.306 2.130 2.354 sum -1.192 4.930 -6.824 8.502 Atomic orbital electron populations 1.22159 0.98403 1.00220 1.00141 1.20951 0.91731 0.85906 1.00536 1.44198 1.74134 1.11571 1.01355 1.19126 1.34552 0.93640 0.90816 0.92569 1.25657 0.97508 0.98356 1.01976 1.70112 1.38018 1.16785 1.31264 0.85531 0.76725 0.78309 0.81502 1.21439 1.22253 1.19644 1.20630 0.92674 0.91407 0.88566 0.91927 1.21774 0.97802 1.00115 0.96348 1.21703 1.01553 0.95430 0.96268 1.23467 0.91207 1.00278 1.06577 1.86480 1.13135 1.78489 1.29085 1.23845 1.03740 0.99718 0.94318 0.93679 0.92430 0.94736 0.95947 0.91116 0.94081 0.93841 0.93892 0.89494 0.90731 0.89988 0.85567 0.89306 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 10.24 71.98 0.74 -5.16 16 2 C 0.13 6.29 5.91 86.38 0.51 6.80 16 3 N -0.59 -28.33 2.39 -678.61 -1.62 -29.95 16 4 C -0.25 -13.20 8.45 84.03 0.71 -12.49 16 5 H 0.06 2.97 6.91 -2.91 -0.02 2.95 16 6 C -0.04 -2.07 4.93 84.86 0.42 -1.65 16 7 N -0.92 -52.42 11.30 21.65 0.24 -52.17 16 8 Si 0.95 44.12 29.61 68.60 2.03 46.15 16 9 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 C 0.18 7.06 2.48 44.88 0.11 7.17 16 13 H 0.06 2.47 7.77 -2.38 -0.02 2.45 16 14 C -0.12 -4.59 4.70 30.32 0.14 -4.45 16 15 C -0.11 -3.06 5.75 30.49 0.18 -2.88 16 16 C -0.07 -1.71 6.45 72.01 0.46 -1.25 16 17 S -0.30 -9.18 22.33 -56.49 -1.26 -10.44 16 18 C -0.07 -2.44 5.63 72.02 0.41 -2.03 16 19 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 20 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.02 1.00 8.02 -2.38 -0.02 0.98 16 23 H 0.07 3.80 5.30 -2.39 -0.01 3.78 16 24 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 25 H 0.04 1.78 7.91 -2.39 -0.02 1.76 16 26 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.07 2.62 7.12 -2.39 -0.02 2.60 16 Total: -1.00 -57.26 266.02 4.14 -53.12 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.07 Total: 9.22 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 3.68 Total: -15.93 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.37 Total: -82.12 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.26 Total: -10.44 kcal Total: -57.26 4.14 -53.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260883756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.464 kcal (2) G-P(sol) polarization free energy of solvation -57.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds