Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.36931 * 120.00043 * 95.92402 * 3 2 1 5 5 H 1.08005 * 120.00246 * 170.23707 * 4 3 2 6 6 C 1.38807 * 120.00032 * 350.24112 * 4 3 2 7 7 N 1.31619 * 119.99910 * 332.60476 * 6 4 3 8 8 Si 1.86804 * 120.00223 * 152.60623 * 6 4 3 9 9 H 1.48498 * 109.47174 * 265.27631 * 8 6 4 10 10 H 1.48500 * 109.47260 * 145.27292 * 8 6 4 11 11 H 1.48500 * 109.46939 * 25.27592 * 8 6 4 12 12 C 1.46498 * 119.99926 * 275.92274 * 3 2 1 13 13 H 1.09005 * 109.39233 * 0.20215 * 12 3 2 14 14 C 1.52590 * 109.39102 * 119.99848 * 12 3 2 15 15 C 1.52578 * 110.72702 * 190.82701 * 14 12 3 16 16 C 1.53106 * 109.95403 * 289.32291 * 15 14 12 17 17 S 1.81742 * 108.83843 * 63.02963 * 16 15 14 18 18 C 1.53099 * 109.39390 * 240.49405 * 12 3 2 19 19 H 1.08996 * 109.47256 * 60.00083 * 1 2 3 20 20 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47174 * 299.99693 * 1 2 3 22 22 H 1.09001 * 109.47174 * 240.00307 * 2 1 3 23 23 H 1.08996 * 109.47256 * 119.99917 * 2 1 3 24 24 H 0.97009 * 120.00059 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.22503 * 311.15034 * 14 12 3 26 26 H 1.08997 * 109.21805 * 70.50134 * 14 12 3 27 27 H 1.08992 * 109.39161 * 49.47486 * 15 14 12 28 28 H 1.08997 * 109.38867 * 169.27677 * 15 14 12 29 29 H 1.08998 * 109.57183 * 182.83340 * 16 15 14 30 30 H 1.09000 * 109.57479 * 303.09324 * 16 15 14 31 31 H 1.08996 * 109.57550 * 296.64099 * 18 12 3 32 32 H 1.09006 * 109.57201 * 57.02041 * 18 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3619 1.9860 1.1795 5 1 2.8674 2.9404 1.1699 6 6 2.0606 1.3723 2.3876 7 7 1.0344 0.5525 2.4714 8 14 3.1117 1.7101 3.8945 9 1 4.1520 0.6576 4.0184 10 1 2.2547 1.7043 5.1072 11 1 3.7640 3.0369 3.7557 12 6 2.1390 2.1155 -1.2619 13 1 1.8186 1.4762 -2.0847 14 6 1.2545 3.3579 -1.2118 15 6 1.1459 3.9995 -2.5919 16 6 2.4805 4.6451 -2.9744 17 16 3.7486 3.3482 -3.0879 18 6 3.5994 2.5221 -1.4758 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 0.8236 0.1240 3.3157 25 1 0.2594 3.0764 -0.8676 26 1 1.6848 4.0767 -0.5145 27 1 0.8893 3.2363 -3.3266 28 1 0.3678 4.7626 -2.5760 29 1 2.3815 5.1444 -3.9383 30 1 2.7657 5.3720 -2.2140 31 1 3.9077 3.2059 -0.6850 32 1 4.2317 1.6343 -1.4605 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260883761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = 0.346105 kcal Electronic energy + Delta-G solvation = -13347.635344 eV Core-core repulsion = 11241.227063 eV Total energy + Delta-G solvation = -2106.408282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.06156 -36.11756 -33.27960 -32.03081 -29.67111 -28.00406 -26.02100 -23.76218 -22.21200 -21.37866 -18.28596 -17.82718 -16.69261 -16.00765 -15.63581 -15.42867 -14.93478 -14.43749 -14.16937 -14.05070 -13.64716 -13.50495 -12.94921 -12.76873 -12.45461 -12.32392 -12.18910 -12.05662 -12.00405 -11.72145 -11.24828 -11.17291 -10.70845 -10.30504 -8.93389 -8.54600 -7.80508 -5.10658 0.92579 1.45846 1.51128 1.56216 1.63669 2.55101 3.27225 3.60220 3.86353 4.03167 4.09384 4.26555 4.38297 4.57868 4.66795 4.70992 4.84417 4.87704 5.00780 5.07667 5.13254 5.21067 5.21810 5.41242 5.52361 5.63085 5.75780 6.17187 6.35524 7.22695 7.93017 8.34568 9.21225 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.010452 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.019041 B = 2678.205148 C = 3032.831086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.170 3.830 3 N -0.602 5.602 4 C -0.247 4.247 5 H 0.069 0.931 6 C -0.046 4.046 7 N -0.912 5.912 8 Si 0.943 3.057 9 H -0.294 1.294 10 H -0.300 1.300 11 H -0.275 1.275 12 C 0.179 3.821 13 H 0.066 0.934 14 C -0.125 4.125 15 C -0.110 4.110 16 C -0.068 4.068 17 S -0.299 6.299 18 C -0.069 4.069 19 H 0.022 0.978 20 H 0.033 0.967 21 H 0.064 0.936 22 H 0.023 0.977 23 H 0.051 0.949 24 H 0.245 0.755 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 5.301 -9.548 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 N -0.324 5.324 4 C -0.377 4.377 5 H 0.087 0.913 6 C -0.241 4.241 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.221 1.221 10 H -0.227 1.227 11 H -0.200 1.200 12 C 0.070 3.930 13 H 0.084 0.916 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.216 4.216 17 S -0.073 6.073 18 C -0.219 4.219 19 H 0.041 0.959 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.644 4.995 -10.261 11.530 hybrid contribution -0.353 0.177 2.297 2.330 sum 1.290 5.172 -7.964 9.583 Atomic orbital electron populations 1.22166 0.98498 0.98861 1.00264 1.20633 0.93106 0.84445 0.97362 1.44486 1.75705 1.10441 1.01778 1.19276 1.29856 1.04243 0.84308 0.91309 1.25245 0.98417 1.01205 0.99247 1.70304 1.25251 1.35450 1.24843 0.85600 0.79134 0.77587 0.80314 1.22115 1.22746 1.20038 1.20558 0.91437 0.92810 0.88161 0.91572 1.21856 1.00016 0.97611 0.96960 1.21701 0.96487 1.00550 0.96202 1.23484 0.94646 0.96953 1.06510 1.86528 1.52826 1.42008 1.25983 1.23903 1.02022 1.01728 0.94240 0.95938 0.94779 0.91751 0.95862 0.93018 0.94505 0.93260 0.93648 0.90675 0.89266 0.85619 0.89901 0.91415 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 9.75 71.98 0.70 -5.56 16 2 C 0.17 8.03 5.53 86.38 0.48 8.50 16 3 N -0.60 -28.49 2.46 -678.61 -1.67 -30.16 16 4 C -0.25 -12.86 8.54 84.03 0.72 -12.14 16 5 H 0.07 3.56 7.04 -2.91 -0.02 3.54 16 6 C -0.05 -2.46 4.80 84.86 0.41 -2.05 16 7 N -0.91 -50.82 8.69 21.65 0.19 -50.63 16 8 Si 0.94 44.22 29.63 68.60 2.03 46.25 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.18 6.96 2.47 44.89 0.11 7.07 16 13 H 0.07 2.52 7.78 -2.38 -0.02 2.50 16 14 C -0.12 -4.42 4.70 30.32 0.14 -4.28 16 15 C -0.11 -2.85 5.75 30.49 0.18 -2.67 16 16 C -0.07 -1.64 6.46 72.02 0.46 -1.18 16 17 S -0.30 -9.02 22.33 -56.49 -1.26 -10.28 16 18 C -0.07 -2.49 5.65 72.02 0.41 -2.08 16 19 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 20 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 3.36 6.12 -2.39 -0.01 3.34 16 22 H 0.02 1.00 8.05 -2.39 -0.02 0.98 16 23 H 0.05 2.75 6.04 -2.39 -0.01 2.73 16 24 H 0.25 13.49 8.31 -92.70 -0.77 12.72 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 27 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.62 7.25 -2.39 -0.02 2.60 16 32 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -55.97 261.53 3.97 -52.01 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.07 Total: 7.20 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 3.61 Total: -14.40 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.48 Total: -80.79 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.26 Total: -10.28 kcal Total: -55.97 3.97 -52.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260883761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.354 kcal (2) G-P(sol) polarization free energy of solvation -55.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds