Wall clock time and date at job start Mon Mar 30 2020 02:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47303 * 2 1 4 4 C 1.46897 * 111.00138 * 174.21184 * 3 2 1 5 5 C 1.50703 * 109.21956 * 304.28917 * 4 3 2 6 6 H 1.08000 * 119.99817 * 125.01612 * 5 4 3 7 7 C 1.37878 * 119.99671 * 305.00588 * 5 4 3 8 8 N 1.31511 * 120.00388 * 355.63999 * 7 5 4 9 9 Si 1.86804 * 119.99642 * 175.63518 * 7 5 4 10 10 H 1.48489 * 109.47410 * 270.00328 * 9 7 5 11 11 H 1.48500 * 109.47103 * 30.00800 * 9 7 5 12 12 H 1.48504 * 109.46573 * 150.00243 * 9 7 5 13 13 C 1.52583 * 109.22440 * 63.68954 * 4 3 2 14 14 C 1.53029 * 109.99476 * 191.00473 * 13 4 3 15 15 S 1.81747 * 108.81184 * 296.94131 * 14 13 4 16 16 C 1.81747 * 102.22419 * 53.26700 * 15 14 13 17 17 C 1.52572 * 109.22746 * 184.88280 * 4 3 2 18 18 H 1.09002 * 109.47407 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47279 * 300.00070 * 1 2 3 20 20 H 1.08998 * 109.47025 * 60.00004 * 1 2 3 21 21 H 1.09004 * 109.46960 * 240.00231 * 2 1 3 22 22 H 1.08998 * 109.47025 * 119.99996 * 2 1 3 23 23 H 1.00902 * 110.99334 * 298.16766 * 3 2 1 24 24 H 0.96994 * 119.99992 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.39202 * 311.09549 * 13 4 3 26 26 H 1.08998 * 109.39276 * 70.80671 * 13 4 3 27 27 H 1.08999 * 109.58974 * 177.13662 * 14 13 4 28 28 H 1.09000 * 109.69535 * 56.79959 * 14 13 4 29 29 H 1.08998 * 109.57016 * 186.93016 * 16 15 14 30 30 H 1.08993 * 109.68037 * 66.60561 * 16 15 14 31 31 H 1.08998 * 109.39675 * 289.19722 * 17 4 3 32 32 H 1.09005 * 109.39199 * 48.89496 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4816 1.4265 0.1383 5 6 3.8835 0.6791 1.3837 6 1 4.6000 -0.1266 1.3224 7 6 3.3365 1.0242 2.6014 8 7 2.5304 2.0594 2.6906 9 14 3.7405 0.0210 4.1246 10 1 2.7511 -1.0764 4.2713 11 1 5.1027 -0.5550 3.9910 12 1 3.6890 0.8974 5.3224 13 6 4.1203 0.7593 -1.0762 14 6 5.6156 0.5463 -0.8302 15 16 6.4137 2.1671 -0.6323 16 6 5.4066 2.9354 0.6709 17 6 3.9341 2.8788 0.2557 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.7210 1.8741 -0.8305 24 1 2.1453 2.3019 3.5472 25 1 3.6428 -0.2046 -1.2525 26 1 3.9841 1.3945 -1.9515 27 1 6.0550 0.0240 -1.6800 28 1 5.7585 -0.0441 0.0749 29 1 5.7096 3.9743 0.8017 30 1 5.5432 2.3945 1.6072 31 1 3.8101 3.3756 -0.7065 32 1 3.3272 3.3876 1.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:44 Heat of formation + Delta-G solvation = -2.383847 kcal Electronic energy + Delta-G solvation = -13693.168283 eV Core-core repulsion = 11586.641621 eV Total energy + Delta-G solvation = -2106.526661 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.69732 -33.15720 -31.96838 -30.34505 -28.62073 -25.46746 -23.88705 -22.25813 -20.61655 -19.11005 -16.27190 -15.58167 -14.70638 -14.31468 -14.10729 -13.58614 -13.16801 -12.68472 -12.46941 -12.09815 -11.84495 -11.65887 -11.35432 -11.00160 -10.85934 -10.61066 -10.54233 -10.23487 -10.08194 -9.77348 -9.31596 -8.92612 -8.65569 -8.37618 -6.88646 -6.81496 -5.90609 -4.04797 2.77988 3.27258 3.35580 3.38484 3.47240 4.40994 5.22728 5.50268 5.74961 5.91487 5.98440 6.07888 6.17650 6.24472 6.28980 6.38011 6.46966 6.62608 6.67684 6.76025 6.81453 7.00164 7.13821 7.20628 7.37004 7.73580 7.88350 8.17588 8.55709 8.81795 9.13877 9.60592 11.08814 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.016266 C = 0.011892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.616120 B = 1721.016208 C = 2353.979302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 N -0.644 5.644 4 C 0.238 3.762 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.091 3.909 8 N -0.836 5.836 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.287 1.287 13 C -0.143 4.143 14 C -0.052 4.052 15 S -0.332 6.332 16 C -0.039 4.039 17 C -0.093 4.093 18 H 0.040 0.960 19 H 0.058 0.942 20 H 0.037 0.963 21 H 0.000 1.000 22 H 0.083 0.917 23 H 0.297 0.703 24 H 0.255 0.745 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.024 0.976 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 -1.281 -4.269 4.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 N -0.271 5.271 4 C 0.149 3.851 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.117 4.117 8 N -0.470 5.470 9 Si 0.697 3.303 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.213 1.213 13 C -0.184 4.184 14 C -0.200 4.200 15 S -0.107 6.107 16 C -0.188 4.188 17 C -0.132 4.132 18 H 0.059 0.941 19 H 0.078 0.922 20 H 0.056 0.944 21 H 0.018 0.982 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.212 -0.642 -3.983 4.213 hybrid contribution -0.562 -1.426 0.609 1.649 sum 0.650 -2.068 -3.374 4.010 Atomic orbital electron populations 1.21749 0.97582 0.99523 1.01245 1.21653 0.92764 0.91765 0.99701 1.60688 1.12870 1.12772 1.40756 1.18414 0.83701 0.91913 0.91118 1.20849 1.26532 1.18511 0.91048 0.92654 1.24838 0.94496 0.94463 0.97873 1.70018 1.28926 1.24196 1.23863 0.86979 0.78781 0.80692 0.83832 1.20791 1.20072 1.21316 1.22474 0.94238 1.00948 1.00704 1.23231 0.98020 0.94590 1.04190 1.86074 1.48908 1.20978 1.54784 1.23333 0.97074 1.00121 0.98226 1.21517 0.93225 0.99014 0.99490 0.94110 0.92249 0.94377 0.98244 0.89895 0.88749 0.93511 0.92406 0.93763 0.90847 0.88842 0.90883 0.88356 0.95764 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.22 37.16 0.38 -2.16 16 2 C 0.07 1.45 5.70 -3.82 -0.02 1.43 16 3 N -0.64 -14.07 5.13 -101.58 -0.52 -14.59 16 4 C 0.24 5.27 0.33 -133.19 -0.04 5.23 16 5 C -0.53 -12.91 4.11 -34.44 -0.14 -13.05 16 6 H 0.06 1.39 5.79 -52.49 -0.30 1.08 16 7 C 0.09 2.28 4.85 -17.82 -0.09 2.19 16 8 N -0.84 -21.77 10.95 55.43 0.61 -21.17 16 9 Si 0.87 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 C -0.14 -2.86 4.73 -26.93 -0.13 -2.99 16 14 C -0.05 -1.00 6.15 37.17 0.23 -0.77 16 15 S -0.33 -6.63 22.33 -107.50 -2.40 -9.03 16 16 C -0.04 -0.83 6.15 37.21 0.23 -0.60 16 17 C -0.09 -2.05 4.63 -26.90 -0.12 -2.17 16 18 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 19 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.00 -0.01 6.45 -51.93 -0.33 -0.34 16 22 H 0.08 1.93 6.54 -51.93 -0.34 1.59 16 23 H 0.30 6.10 8.79 -39.29 -0.35 5.75 16 24 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 25 H 0.06 1.15 6.09 -51.93 -0.32 0.83 16 26 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.93 5.87 -51.93 -0.31 1.62 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.10 2.26 6.76 -51.93 -0.35 1.91 16 31 H 0.02 0.51 8.06 -51.93 -0.42 0.09 16 32 H 0.10 2.53 6.55 -51.93 -0.34 2.19 16 LS Contribution 254.10 15.07 3.83 3.83 Total: -1.00 -25.04 254.10 -7.94 -32.97 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.72 Total: 5.86 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 0.29 Total: -12.91 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.09 Total: -35.76 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -2.40 Total: -9.03 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.04 -7.94 -32.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.590 kcal (2) G-P(sol) polarization free energy of solvation -25.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds