Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47303 * 2 1 4 4 C 1.46897 * 111.00138 * 174.21184 * 3 2 1 5 5 C 1.50703 * 109.21956 * 304.28917 * 4 3 2 6 6 H 1.08000 * 119.99817 * 125.01612 * 5 4 3 7 7 C 1.37878 * 119.99671 * 305.00588 * 5 4 3 8 8 N 1.31511 * 120.00388 * 355.63999 * 7 5 4 9 9 Si 1.86804 * 119.99642 * 175.63518 * 7 5 4 10 10 H 1.48489 * 109.47410 * 270.00328 * 9 7 5 11 11 H 1.48500 * 109.47103 * 30.00800 * 9 7 5 12 12 H 1.48504 * 109.46573 * 150.00243 * 9 7 5 13 13 C 1.52583 * 109.22440 * 63.68954 * 4 3 2 14 14 C 1.53029 * 109.99476 * 191.00473 * 13 4 3 15 15 S 1.81747 * 108.81184 * 296.94131 * 14 13 4 16 16 C 1.81747 * 102.22419 * 53.26700 * 15 14 13 17 17 C 1.52572 * 109.22746 * 184.88280 * 4 3 2 18 18 H 1.09002 * 109.47407 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47279 * 300.00070 * 1 2 3 20 20 H 1.08998 * 109.47025 * 60.00004 * 1 2 3 21 21 H 1.09004 * 109.46960 * 240.00231 * 2 1 3 22 22 H 1.08998 * 109.47025 * 119.99996 * 2 1 3 23 23 H 1.00902 * 110.99334 * 298.16766 * 3 2 1 24 24 H 0.96994 * 119.99992 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.39202 * 311.09549 * 13 4 3 26 26 H 1.08998 * 109.39276 * 70.80671 * 13 4 3 27 27 H 1.08999 * 109.58974 * 177.13662 * 14 13 4 28 28 H 1.09000 * 109.69535 * 56.79959 * 14 13 4 29 29 H 1.08998 * 109.57016 * 186.93016 * 16 15 14 30 30 H 1.08993 * 109.68037 * 66.60561 * 16 15 14 31 31 H 1.08998 * 109.39675 * 289.19722 * 17 4 3 32 32 H 1.09005 * 109.39199 * 48.89496 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4816 1.4265 0.1383 5 6 3.8835 0.6791 1.3837 6 1 4.6000 -0.1266 1.3224 7 6 3.3365 1.0242 2.6014 8 7 2.5304 2.0594 2.6906 9 14 3.7405 0.0210 4.1246 10 1 2.7511 -1.0764 4.2713 11 1 5.1027 -0.5550 3.9910 12 1 3.6890 0.8974 5.3224 13 6 4.1203 0.7593 -1.0762 14 6 5.6156 0.5463 -0.8302 15 16 6.4137 2.1671 -0.6323 16 6 5.4066 2.9354 0.6709 17 6 3.9341 2.8788 0.2557 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.7210 1.8741 -0.8305 24 1 2.1453 2.3019 3.5472 25 1 3.6428 -0.2046 -1.2525 26 1 3.9841 1.3945 -1.9515 27 1 6.0550 0.0240 -1.6800 28 1 5.7585 -0.0441 0.0749 29 1 5.7096 3.9743 0.8017 30 1 5.5432 2.3945 1.6072 31 1 3.8101 3.3756 -0.7065 32 1 3.3272 3.3876 1.0047 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = -16.399504 kcal Electronic energy + Delta-G solvation = -13693.776047 eV Core-core repulsion = 11586.641621 eV Total energy + Delta-G solvation = -2107.134426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41978 -34.80022 -33.84423 -32.02461 -30.20867 -27.36070 -25.55624 -23.89060 -22.25157 -20.91734 -18.03160 -17.32086 -16.50043 -16.04073 -15.78234 -15.30572 -14.79861 -14.33258 -14.19511 -13.62689 -13.53391 -13.26426 -13.11389 -12.84085 -12.50953 -12.36060 -12.20859 -11.95359 -11.79023 -11.48129 -11.02910 -10.71567 -10.41330 -10.24826 -8.53202 -8.45792 -7.83203 -5.99720 1.17684 1.40244 1.46877 1.50167 1.83548 2.50129 3.34691 3.82088 4.18939 4.31479 4.44761 4.46692 4.59440 4.60841 4.72316 4.79575 4.91340 5.02613 5.09451 5.11710 5.18461 5.42397 5.44695 5.51684 5.62925 5.82866 6.05465 6.34593 6.75027 7.04408 7.40949 7.66710 9.13572 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.016266 C = 0.011892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.616120 B = 1721.016208 C = 2353.979302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 N -0.659 5.659 4 C 0.233 3.767 5 C -0.525 4.525 6 H 0.046 0.954 7 C 0.058 3.942 8 N -0.856 5.856 9 Si 0.911 3.089 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.291 1.291 13 C -0.135 4.135 14 C -0.052 4.052 15 S -0.316 6.316 16 C -0.040 4.040 17 C -0.085 4.085 18 H 0.061 0.939 19 H 0.038 0.962 20 H 0.055 0.945 21 H 0.012 0.988 22 H 0.051 0.949 23 H 0.306 0.694 24 H 0.249 0.751 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -1.741 -5.496 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 N -0.287 5.287 4 C 0.143 3.857 5 C -0.564 4.564 6 H 0.064 0.936 7 C -0.147 4.147 8 N -0.491 5.491 9 Si 0.740 3.260 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.217 1.217 13 C -0.176 4.176 14 C -0.201 4.201 15 S -0.091 6.091 16 C -0.188 4.188 17 C -0.125 4.125 18 H 0.080 0.920 19 H 0.057 0.943 20 H 0.074 0.926 21 H 0.030 0.970 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.433 -1.112 -5.213 5.519 hybrid contribution -0.601 -1.303 0.954 1.723 sum 0.832 -2.416 -4.259 4.966 Atomic orbital electron populations 1.21652 0.95511 1.00922 1.01067 1.21579 0.94470 0.90830 0.98628 1.60594 1.12773 1.13798 1.41532 1.18420 0.84263 0.91775 0.91207 1.20985 1.25580 1.17820 0.91973 0.93605 1.25238 0.94819 0.95094 0.99519 1.70122 1.30071 1.25201 1.23729 0.86326 0.78231 0.79547 0.81945 1.21161 1.20179 1.21736 1.22347 0.94452 1.00957 0.99828 1.23252 0.97798 0.94365 1.04642 1.86011 1.48435 1.20956 1.53684 1.23197 0.96928 1.00933 0.97750 1.21397 0.93387 0.98815 0.98915 0.91958 0.94267 0.92619 0.96994 0.93088 0.87762 0.94114 0.92100 0.92901 0.88124 0.90313 0.89442 0.90742 0.94923 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 10.22 71.98 0.74 -3.77 16 2 C 0.07 2.95 5.70 86.30 0.49 3.44 16 3 N -0.66 -28.17 5.13 -475.29 -2.44 -30.61 16 4 C 0.23 10.09 0.33 2.50 0.00 10.10 16 5 C -0.52 -25.38 4.11 25.60 0.11 -25.28 16 6 H 0.05 2.28 5.79 -2.91 -0.02 2.27 16 7 C 0.06 2.93 4.85 84.66 0.41 3.34 16 8 N -0.86 -45.04 10.95 21.45 0.23 -44.80 16 9 Si 0.91 41.47 29.54 68.60 2.03 43.50 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 C -0.14 -5.12 4.73 30.47 0.14 -4.98 16 14 C -0.05 -1.90 6.15 71.99 0.44 -1.46 16 15 S -0.32 -11.93 22.33 -56.49 -1.26 -13.19 16 16 C -0.04 -1.63 6.15 72.02 0.44 -1.19 16 17 C -0.09 -3.70 4.63 30.49 0.14 -3.56 16 18 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 19 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.01 0.45 6.45 -2.39 -0.02 0.43 16 22 H 0.05 2.34 6.54 -2.39 -0.02 2.33 16 23 H 0.31 12.09 8.79 -89.69 -0.79 11.30 16 24 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 25 H 0.06 2.27 6.09 -2.39 -0.01 2.26 16 26 H 0.05 1.92 8.06 -2.39 -0.02 1.90 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.08 3.13 5.87 -2.39 -0.01 3.12 16 29 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.07 3.41 6.76 -2.39 -0.02 3.40 16 31 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 32 H 0.07 3.70 6.55 -2.38 -0.02 3.68 16 Total: -1.00 -51.58 254.10 1.79 -49.78 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.32 Total: 18.68 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 2.91 Total: -23.36 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.21 Total: -75.41 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -11.93 SS G_CDS: -1.26 Total: -13.19 kcal Total: -51.58 1.79 -49.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.385 kcal (2) G-P(sol) polarization free energy of solvation -51.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds