Wall clock time and date at job start Mon Mar 30 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47455 * 2 1 4 4 C 1.46904 * 111.00120 * 299.31721 * 3 2 1 5 5 C 1.53001 * 109.46784 * 299.81013 * 4 3 2 6 6 C 1.46902 * 111.00235 * 63.26951 * 3 2 1 7 7 C 1.50698 * 110.43255 * 46.65040 * 6 3 2 8 8 H 1.08003 * 120.00281 * 353.53467 * 7 6 3 9 9 C 1.37882 * 120.00198 * 173.53515 * 7 6 3 10 10 N 1.31513 * 119.99635 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00224 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47253 * 60.00101 * 11 9 7 13 13 H 1.48507 * 109.47325 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47392 * 300.00080 * 11 9 7 15 15 C 1.55878 * 110.82371 * 169.84744 * 6 3 2 16 16 S 1.83088 * 82.43896 * 94.28462 * 15 6 3 17 17 C 1.55885 * 110.78198 * 283.48132 * 6 3 2 18 18 H 1.08997 * 109.47389 * 171.42832 * 1 2 3 19 19 H 1.09006 * 109.47183 * 291.42923 * 1 2 3 20 20 H 1.08998 * 109.46735 * 51.42510 * 1 2 3 21 21 H 1.09001 * 109.47131 * 239.99386 * 2 1 3 22 22 H 1.09008 * 109.46819 * 120.00102 * 2 1 3 23 23 H 1.09000 * 109.46739 * 59.80744 * 4 3 2 24 24 H 1.08992 * 109.47159 * 179.81120 * 4 3 2 25 25 H 1.08999 * 109.47345 * 65.29534 * 5 4 3 26 26 H 1.09001 * 109.46769 * 185.28628 * 5 4 3 27 27 H 1.08991 * 109.47214 * 305.29470 * 5 4 3 28 28 H 0.96996 * 119.99983 * 180.02562 * 10 9 7 29 29 H 1.09000 * 114.38593 * 340.89339 * 15 6 3 30 30 H 1.09000 * 114.38255 * 207.67438 * 15 6 3 31 31 H 1.08998 * 114.37789 * 152.29917 * 17 6 3 32 32 H 1.08994 * 114.38131 * 19.07869 * 17 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5622 2.1052 -1.1958 5 6 2.0904 1.4021 -2.4478 6 6 1.6137 2.0870 1.2249 7 6 1.8839 1.2315 2.4357 8 1 2.2206 0.2127 2.3129 9 6 1.7013 1.7494 3.7004 10 7 1.2918 2.9902 3.8500 11 14 2.0356 0.6889 5.2013 12 1 3.4553 0.2535 5.1936 13 1 1.7660 1.4743 6.4325 14 1 1.1519 -0.5042 5.1713 15 6 2.3411 3.4605 1.3433 16 16 0.8122 4.0662 0.5386 17 6 0.1100 2.4925 1.1573 18 1 -0.3634 -1.0161 -0.1532 19 1 -0.3634 0.3755 0.9567 20 1 -0.3633 0.6408 -0.8034 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8901 23 1 0.4724 2.1168 -1.2181 24 1 1.9360 3.1286 -1.1688 25 1 1.6425 0.4113 -2.5245 26 1 1.8307 1.9873 -3.3300 27 1 3.1741 1.3067 -2.3811 28 1 1.1637 3.3547 4.7397 29 1 3.2378 3.5492 0.7301 30 1 2.4796 3.8096 2.3666 31 1 -0.3793 2.5691 2.1283 32 1 -0.4725 1.9393 0.4207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:57 Heat of formation + Delta-G solvation = 51.524111 kcal Electronic energy + Delta-G solvation = -13826.155558 eV Core-core repulsion = 11721.966521 eV Total energy + Delta-G solvation = -2104.189037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.59375 -33.73349 -30.95045 -30.67099 -27.53735 -25.74783 -25.38181 -22.75425 -20.59493 -18.43085 -16.41247 -15.70560 -15.01981 -14.65302 -14.16262 -13.63943 -12.94735 -12.44148 -12.27012 -12.07818 -11.87959 -11.51321 -11.25834 -10.98805 -10.93616 -10.80891 -10.68100 -10.65262 -10.12416 -10.00724 -9.79613 -9.40466 -8.59311 -7.93749 -7.20454 -6.23463 -6.16054 -4.29179 3.17526 3.21433 3.28713 3.31338 3.48590 4.27093 4.93109 5.14322 5.70150 5.80647 5.91298 6.01872 6.03695 6.09237 6.18348 6.29281 6.40899 6.55574 6.60298 6.72979 6.80641 6.82908 6.93927 7.00670 7.11865 7.37848 7.66675 7.91770 8.21030 8.42327 8.77957 9.37709 10.83299 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.014062 C = 0.011473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.864407 B = 1990.694335 C = 2439.892664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.056 3.944 3 N -0.515 5.515 4 C 0.042 3.958 5 C -0.149 4.149 6 C 0.221 3.779 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.878 5.878 11 Si 0.900 3.100 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.014 4.014 16 S -0.430 6.430 17 C -0.067 4.067 18 H 0.042 0.958 19 H 0.076 0.924 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.085 0.915 23 H 0.031 0.969 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 -3.464 -5.415 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.072 4.072 3 N -0.237 5.237 4 C -0.087 4.087 5 C -0.207 4.207 6 C 0.130 3.870 7 C -0.541 4.541 8 H 0.088 0.912 9 C -0.139 4.139 10 N -0.515 5.515 11 Si 0.727 3.273 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.162 4.162 16 S -0.204 6.204 17 C -0.217 4.217 18 H 0.061 0.939 19 H 0.095 0.905 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.104 0.896 23 H 0.049 0.951 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.115 -2.220 -5.995 6.394 hybrid contribution -0.572 -1.232 1.524 2.041 sum -0.687 -3.452 -4.471 5.690 Atomic orbital electron populations 1.22747 0.99677 1.00295 1.02524 1.22082 0.92150 0.91436 1.01565 1.62265 1.58200 1.01476 1.01738 1.22514 0.97754 0.99102 0.89297 1.21910 1.01447 0.99818 0.97547 1.20510 0.86016 0.92119 0.88362 1.21160 1.45200 0.98709 0.89024 0.91222 1.25007 0.94626 0.95150 0.99167 1.69893 1.44874 1.13430 1.23292 0.86519 0.78972 0.80174 0.81589 1.20047 1.21256 1.20206 1.25165 0.92549 0.95478 1.03003 1.87510 1.21190 1.40597 1.71101 1.26222 1.03963 0.88931 1.02557 0.93944 0.90546 0.93223 0.92690 0.89643 0.95108 0.89194 0.93671 0.93511 0.92582 0.92411 0.90982 0.85037 0.87768 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 8.09 37.16 0.30 -3.10 16 2 C 0.06 1.04 5.31 -3.83 -0.02 1.02 16 3 N -0.51 -10.63 4.70 -257.71 -1.21 -11.85 16 4 C 0.04 0.80 3.87 -3.82 -0.01 0.78 16 5 C -0.15 -2.34 9.52 37.16 0.35 -1.98 16 6 C 0.22 5.09 0.53 -129.68 -0.07 5.02 16 7 C -0.50 -12.37 7.51 -34.44 -0.26 -12.63 16 8 H 0.07 1.71 5.63 -52.48 -0.30 1.42 16 9 C 0.06 1.60 4.98 -17.82 -0.09 1.51 16 10 N -0.88 -22.75 9.64 55.43 0.53 -22.22 16 11 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 C -0.01 -0.33 7.23 38.69 0.28 -0.05 16 16 S -0.43 -9.95 20.53 -107.50 -2.21 -12.16 16 17 C -0.07 -1.54 5.49 38.70 0.21 -1.33 16 18 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 19 H 0.08 1.50 5.51 -51.93 -0.29 1.22 16 20 H 0.05 0.86 5.43 -51.93 -0.28 0.58 16 21 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16 22 H 0.09 1.70 5.66 -51.92 -0.29 1.41 16 23 H 0.03 0.61 4.60 -51.93 -0.24 0.37 16 24 H 0.09 1.84 5.72 -40.69 -0.23 1.61 16 25 H 0.04 0.67 6.69 -51.93 -0.35 0.32 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.07 1.63 8.10 -51.93 -0.42 1.21 16 30 H 0.13 3.41 5.75 -51.93 -0.30 3.11 16 31 H 0.10 2.64 6.96 -51.93 -0.36 2.28 16 32 H 0.09 1.88 3.71 -51.93 -0.19 1.69 16 LS Contribution 241.15 15.07 3.63 3.63 Total: -1.00 -25.24 241.15 -7.56 -32.80 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.98 Total: 5.77 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.70 Total: -10.76 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.68 Total: -34.07 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -2.21 Total: -12.16 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -25.24 -7.56 -32.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.321 kcal (2) G-P(sol) polarization free energy of solvation -25.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds