Wall clock time and date at job start Mon Mar 30 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47455 * 2 1 4 4 C 1.46904 * 111.00120 * 299.31721 * 3 2 1 5 5 C 1.53001 * 109.46784 * 299.81013 * 4 3 2 6 6 C 1.46902 * 111.00235 * 63.26951 * 3 2 1 7 7 C 1.50698 * 110.43255 * 46.65040 * 6 3 2 8 8 H 1.08003 * 120.00281 * 353.53467 * 7 6 3 9 9 C 1.37882 * 120.00198 * 173.53515 * 7 6 3 10 10 N 1.31513 * 119.99635 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00224 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47253 * 60.00101 * 11 9 7 13 13 H 1.48507 * 109.47325 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47392 * 300.00080 * 11 9 7 15 15 C 1.55878 * 110.82371 * 169.84744 * 6 3 2 16 16 S 1.83088 * 82.43896 * 94.28462 * 15 6 3 17 17 C 1.55885 * 110.78198 * 283.48132 * 6 3 2 18 18 H 1.08997 * 109.47389 * 171.42832 * 1 2 3 19 19 H 1.09006 * 109.47183 * 291.42923 * 1 2 3 20 20 H 1.08998 * 109.46735 * 51.42510 * 1 2 3 21 21 H 1.09001 * 109.47131 * 239.99386 * 2 1 3 22 22 H 1.09008 * 109.46819 * 120.00102 * 2 1 3 23 23 H 1.09000 * 109.46739 * 59.80744 * 4 3 2 24 24 H 1.08992 * 109.47159 * 179.81120 * 4 3 2 25 25 H 1.08999 * 109.47345 * 65.29534 * 5 4 3 26 26 H 1.09001 * 109.46769 * 185.28628 * 5 4 3 27 27 H 1.08991 * 109.47214 * 305.29470 * 5 4 3 28 28 H 0.96996 * 119.99983 * 180.02562 * 10 9 7 29 29 H 1.09000 * 114.38593 * 340.89339 * 15 6 3 30 30 H 1.09000 * 114.38255 * 207.67438 * 15 6 3 31 31 H 1.08998 * 114.37789 * 152.29917 * 17 6 3 32 32 H 1.08994 * 114.38131 * 19.07869 * 17 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5622 2.1052 -1.1958 5 6 2.0904 1.4021 -2.4478 6 6 1.6137 2.0870 1.2249 7 6 1.8839 1.2315 2.4357 8 1 2.2206 0.2127 2.3129 9 6 1.7013 1.7494 3.7004 10 7 1.2918 2.9902 3.8500 11 14 2.0356 0.6889 5.2013 12 1 3.4553 0.2535 5.1936 13 1 1.7660 1.4743 6.4325 14 1 1.1519 -0.5042 5.1713 15 6 2.3411 3.4605 1.3433 16 16 0.8122 4.0662 0.5386 17 6 0.1100 2.4925 1.1573 18 1 -0.3634 -1.0161 -0.1532 19 1 -0.3634 0.3755 0.9567 20 1 -0.3633 0.6408 -0.8034 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8901 23 1 0.4724 2.1168 -1.2181 24 1 1.9360 3.1286 -1.1688 25 1 1.6425 0.4113 -2.5245 26 1 1.8307 1.9873 -3.3300 27 1 3.1741 1.3067 -2.3811 28 1 1.1637 3.3547 4.7397 29 1 3.2378 3.5492 0.7301 30 1 2.4796 3.8096 2.3666 31 1 -0.3793 2.5691 2.1283 32 1 -0.4725 1.9393 0.4207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:57 Heat of formation + Delta-G solvation = 36.248005 kcal Electronic energy + Delta-G solvation = -13826.817979 eV Core-core repulsion = 11721.966521 eV Total energy + Delta-G solvation = -2104.851458 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24248 -35.50484 -32.74923 -32.09833 -29.11704 -27.56174 -27.23849 -24.25974 -22.21558 -20.11580 -18.24209 -17.44928 -16.77804 -16.26110 -15.91247 -15.28665 -14.55595 -13.95801 -13.84669 -13.70672 -13.66605 -13.10823 -12.91158 -12.68718 -12.64595 -12.53702 -12.36956 -12.20301 -11.74130 -11.65122 -11.48451 -10.98643 -10.50409 -9.79621 -8.83049 -8.08419 -8.06586 -6.25086 1.31903 1.44860 1.49703 1.55270 1.61699 2.43872 3.13479 3.44251 4.17198 4.25717 4.38433 4.51791 4.59748 4.63191 4.73644 4.77374 4.91973 4.93478 5.01614 5.10804 5.26009 5.29828 5.38150 5.43676 5.48325 5.62864 5.77741 6.11975 6.46962 6.76938 6.89981 7.44837 8.90614 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.014062 C = 0.011473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.864407 B = 1990.694335 C = 2439.892664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 N -0.523 5.523 4 C 0.045 3.955 5 C -0.140 4.140 6 C 0.222 3.778 7 C -0.510 4.510 8 H 0.069 0.931 9 C 0.026 3.974 10 N -0.900 5.900 11 Si 0.956 3.044 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.273 1.273 15 C -0.019 4.019 16 S -0.425 6.425 17 C -0.059 4.059 18 H 0.068 0.932 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -4.706 -6.498 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.073 4.073 3 N -0.245 5.245 4 C -0.083 4.083 5 C -0.198 4.198 6 C 0.131 3.869 7 C -0.549 4.549 8 H 0.087 0.913 9 C -0.176 4.176 10 N -0.538 5.538 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.217 1.217 14 H -0.198 1.198 15 C -0.167 4.167 16 S -0.199 6.199 17 C -0.209 4.209 18 H 0.087 0.913 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.096 -3.475 -7.093 7.899 hybrid contribution -0.579 -0.836 1.822 2.087 sum -0.675 -4.311 -5.271 6.843 Atomic orbital electron populations 1.22619 0.98789 1.01886 1.01194 1.22124 0.92886 0.90203 1.02052 1.62244 1.58595 1.02362 1.01293 1.22446 0.97321 0.98558 0.89996 1.21827 1.01348 1.00344 0.96301 1.20389 0.85656 0.91588 0.89277 1.21406 1.44803 0.98896 0.89839 0.91275 1.25609 0.94606 0.95971 1.01374 1.70016 1.45809 1.14614 1.23348 0.85642 0.78700 0.78767 0.78678 1.19904 1.21660 1.19789 1.25049 0.93233 0.96558 1.01887 1.87420 1.20785 1.41025 1.70633 1.26133 1.04134 0.89041 1.01591 0.91320 0.93038 0.92830 0.90140 0.91140 0.95781 0.91023 0.92444 0.91654 0.92558 0.92840 0.90304 0.87327 0.90523 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.10 8.09 71.98 0.58 -5.52 16 2 C 0.05 1.93 5.31 86.30 0.46 2.39 16 3 N -0.52 -20.82 4.70 -969.26 -4.56 -25.37 16 4 C 0.05 1.62 3.87 86.30 0.33 1.96 16 5 C -0.14 -3.94 9.52 71.98 0.69 -3.25 16 6 C 0.22 10.18 0.53 4.77 0.00 10.18 16 7 C -0.51 -25.06 7.51 25.60 0.19 -24.87 16 8 H 0.07 3.36 5.63 -2.91 -0.02 3.34 16 9 C 0.03 1.27 4.98 84.66 0.42 1.70 16 10 N -0.90 -47.31 9.64 21.45 0.21 -47.11 16 11 Si 0.96 40.62 29.54 68.60 2.03 42.65 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 15 C -0.02 -0.89 7.23 72.98 0.53 -0.37 16 16 S -0.42 -19.54 20.53 -56.49 -1.16 -20.70 16 17 C -0.06 -2.71 5.49 72.98 0.40 -2.31 16 18 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 19 H 0.05 1.95 5.51 -2.38 -0.01 1.94 16 20 H 0.05 1.71 5.43 -2.39 -0.01 1.70 16 21 H 0.08 2.42 6.39 -2.39 -0.02 2.40 16 22 H 0.07 2.69 5.66 -2.38 -0.01 2.68 16 23 H 0.02 0.90 4.60 -2.39 -0.01 0.89 16 24 H 0.07 2.83 5.72 -9.54 -0.05 2.78 16 25 H 0.06 1.47 6.69 -2.39 -0.02 1.46 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.08 3.58 8.10 -2.39 -0.02 3.56 16 30 H 0.11 5.75 5.75 -2.39 -0.01 5.73 16 31 H 0.08 3.94 6.96 -2.39 -0.02 3.92 16 32 H 0.11 4.42 3.71 -2.39 -0.01 4.41 16 Total: -1.00 -52.51 241.15 1.20 -51.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.08 Total: 19.34 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.61 Total: -20.11 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -4.35 Total: -72.48 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -19.54 SS G_CDS: -1.16 Total: -20.70 kcal Total: -52.51 1.20 -51.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.557 kcal (2) G-P(sol) polarization free energy of solvation -52.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds