Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99880 * 2 1 4 4 C 1.46893 * 111.00135 * 123.95822 * 2 1 3 5 5 C 1.50701 * 109.39197 * 59.44704 * 4 2 1 6 6 H 1.08000 * 120.00178 * 235.21817 * 5 4 2 7 7 C 1.37871 * 119.99501 * 55.21978 * 5 4 2 8 8 N 1.31513 * 120.00251 * 353.84079 * 7 5 4 9 9 Si 1.86805 * 120.00039 * 173.84061 * 7 5 4 10 10 H 1.48502 * 109.46544 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47185 * 119.99690 * 9 7 5 12 12 H 1.48502 * 109.47172 * 239.99943 * 9 7 5 13 13 C 1.52625 * 109.32436 * 179.30311 * 4 2 1 14 14 C 1.52578 * 110.70355 * 190.87167 * 13 4 2 15 15 C 1.53099 * 109.87724 * 289.17390 * 14 13 4 16 16 S 1.81747 * 108.84107 * 63.07296 * 15 14 13 17 17 C 1.53101 * 109.38715 * 299.65091 * 4 2 1 18 18 H 1.09002 * 109.46713 * 302.05860 * 1 2 3 19 19 H 1.08998 * 109.46786 * 62.05576 * 1 2 3 20 20 H 1.08993 * 109.47037 * 182.05511 * 1 2 3 21 21 H 1.09001 * 109.47044 * 183.95769 * 3 2 1 22 22 H 1.09005 * 109.47182 * 303.95356 * 3 2 1 23 23 H 1.09001 * 109.47413 * 63.95812 * 3 2 1 24 24 H 0.97003 * 119.99695 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.31498 * 70.50205 * 13 4 2 26 26 H 1.08996 * 109.15155 * 311.13582 * 13 4 2 27 27 H 1.08994 * 109.38894 * 169.07501 * 14 13 4 28 28 H 1.09004 * 109.39217 * 49.27040 * 14 13 4 29 29 H 1.08997 * 109.58008 * 182.88296 * 15 14 13 30 30 H 1.09001 * 109.57185 * 303.14104 * 15 14 13 31 31 H 1.08998 * 109.57856 * 57.11353 * 17 4 2 32 32 H 1.09005 * 109.68309 * 296.79509 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.5002 -2.1870 1.0559 6 1 0.9696 -2.6226 1.8896 7 6 1.7246 -2.9308 -0.0830 8 7 2.2619 -2.3659 -1.1422 9 14 1.2654 -4.7411 -0.1218 10 1 0.6825 -5.1320 1.1869 11 1 0.2695 -4.9762 -1.1978 12 1 2.4798 -5.5543 -0.3850 13 6 3.5210 -0.7556 1.0907 14 6 4.0982 -1.7538 2.0900 15 6 3.8801 -1.2461 3.5178 16 16 2.0939 -1.1437 3.8379 17 6 1.5106 -0.1331 2.4445 18 1 -0.3633 0.5455 0.8710 19 1 -0.3633 0.4816 -0.9078 20 1 -0.3633 -1.0269 0.0369 21 1 3.0828 1.3433 -0.0709 22 1 1.5898 1.9164 -0.8525 23 1 1.7045 1.8724 0.9233 24 1 2.4194 -2.8893 -1.9436 25 1 3.8823 0.2440 1.3323 26 1 3.8498 -1.0223 0.0863 27 1 5.1661 -1.8723 1.9072 28 1 3.6011 -2.7162 1.9683 29 1 4.3388 -1.9369 4.2251 30 1 4.3298 -0.2593 3.6271 31 1 0.4213 -0.0966 2.4505 32 1 1.9103 0.8772 2.5336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -2.386317 kcal Electronic energy + Delta-G solvation = -13884.226405 eV Core-core repulsion = 11777.699636 eV Total energy + Delta-G solvation = -2106.526768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73966 -35.39109 -33.95295 -31.03878 -28.73250 -27.76683 -26.44711 -24.78292 -22.31645 -20.40645 -18.13118 -17.18404 -16.63301 -15.87941 -15.48591 -15.25885 -15.11776 -14.64903 -14.28813 -13.88560 -13.52132 -13.16517 -12.86629 -12.76772 -12.49194 -12.40094 -12.27749 -11.99192 -11.65764 -11.62469 -11.07967 -10.79856 -10.37204 -10.31702 -8.69327 -8.13275 -7.74791 -5.90908 1.14067 1.43333 1.50541 1.58566 1.84732 2.56268 3.35336 3.78831 4.14186 4.24260 4.28666 4.36743 4.53986 4.61502 4.66511 4.69089 4.79126 4.90448 4.94456 5.03415 5.07869 5.19252 5.35939 5.52758 5.72174 5.87785 6.01737 6.36893 6.73267 6.95914 7.25520 7.71865 9.19937 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.017455 C = 0.013309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.152434 B = 1603.779726 C = 2103.387699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.514 5.514 3 C 0.024 3.976 4 C 0.239 3.761 5 C -0.506 4.506 6 H 0.051 0.949 7 C 0.051 3.949 8 N -0.861 5.861 9 Si 0.915 3.085 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.093 4.093 14 C -0.107 4.107 15 C -0.060 4.060 16 S -0.297 6.297 17 C -0.087 4.087 18 H 0.009 0.991 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.015 0.985 24 H 0.247 0.753 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 4.473 4.864 6.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.237 5.237 3 C -0.124 4.124 4 C 0.150 3.850 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.153 4.153 8 N -0.497 5.497 9 Si 0.744 3.256 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.132 4.132 14 C -0.146 4.146 15 C -0.208 4.208 16 S -0.072 6.072 17 C -0.237 4.237 18 H 0.028 0.972 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.711 3.782 5.076 6.557 hybrid contribution -0.023 -0.162 -0.618 0.640 sum 1.688 3.620 4.458 5.985 Atomic orbital electron populations 1.21975 0.89162 1.00664 0.97768 1.62278 1.06468 1.10471 1.44447 1.22392 1.00285 0.90750 0.98998 1.18785 0.91826 0.92210 0.82184 1.20961 1.37388 0.96061 1.00153 0.93124 1.25281 0.95416 0.99006 0.95582 1.70275 1.42730 1.34567 1.02099 0.86192 0.77572 0.84481 0.77386 1.20040 1.21819 1.21259 1.21291 0.96561 0.95738 0.99605 1.21566 0.99936 1.00695 0.92410 1.23364 0.92208 1.04665 1.00594 1.86131 1.11315 1.73910 1.35851 1.24133 1.02777 0.98805 0.97977 0.97244 0.93177 0.92983 0.92593 0.92286 0.96721 0.94353 0.95085 0.92236 0.91560 0.91546 0.87102 0.89695 0.90244 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.22 8.85 127.69 1.13 3.35 16 2 N -0.51 -22.86 3.68 -903.48 -3.33 -26.19 16 3 C 0.02 0.91 8.82 127.69 1.13 2.03 16 4 C 0.24 10.66 0.07 2.69 0.00 10.66 16 5 C -0.51 -25.46 4.12 25.60 0.11 -25.35 16 6 H 0.05 2.69 7.06 -2.91 -0.02 2.67 16 7 C 0.05 2.64 5.13 84.65 0.43 3.08 16 8 N -0.86 -46.39 11.15 21.44 0.24 -46.15 16 9 Si 0.92 42.55 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 C -0.09 -3.99 3.54 30.33 0.11 -3.88 16 14 C -0.11 -4.12 5.60 30.49 0.17 -3.94 16 15 C -0.06 -2.00 6.45 72.02 0.46 -1.53 16 16 S -0.30 -11.49 21.01 -56.49 -1.19 -12.67 16 17 C -0.09 -3.50 4.53 72.02 0.33 -3.17 16 18 H 0.01 0.36 6.58 -2.39 -0.02 0.35 16 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.05 2.44 6.83 -2.39 -0.02 2.42 16 21 H 0.06 2.08 6.48 -2.39 -0.02 2.07 16 22 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.01 0.50 6.46 -2.39 -0.02 0.49 16 24 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 25 H 0.03 1.21 6.89 -2.39 -0.02 1.19 16 26 H 0.06 2.93 6.95 -2.39 -0.02 2.91 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.96 6.56 -2.39 -0.02 2.95 16 29 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 3.31 6.40 -2.39 -0.02 3.30 16 32 H 0.07 2.48 6.66 -2.38 -0.02 2.47 16 Total: -1.00 -54.62 249.67 2.71 -51.92 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.09 Total: 7.29 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.86 Total: -18.77 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -3.09 Total: -72.34 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -11.49 SS G_CDS: -1.19 Total: -12.67 kcal Total: -54.62 2.71 -51.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.531 kcal (2) G-P(sol) polarization free energy of solvation -54.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds