Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47074 * 2 1 4 4 C 1.46899 * 110.99923 * 185.46375 * 3 2 1 5 5 C 1.50704 * 108.84982 * 185.07422 * 4 3 2 6 6 H 1.07996 * 120.00058 * 212.78795 * 5 4 3 7 7 C 1.37878 * 119.99809 * 32.78497 * 5 4 3 8 8 N 1.31512 * 119.99597 * 184.71945 * 7 5 4 9 9 Si 1.86797 * 120.00099 * 4.71547 * 7 5 4 10 10 H 1.48497 * 109.47086 * 275.43373 * 9 7 5 11 11 H 1.48501 * 109.47329 * 35.43394 * 9 7 5 12 12 H 1.48497 * 109.46948 * 155.43349 * 9 7 5 13 13 C 1.52941 * 108.89001 * 303.65195 * 4 3 2 14 14 C 1.55151 * 108.96247 * 90.54897 * 13 4 3 15 15 S 1.83989 * 100.90500 * 41.44345 * 14 13 4 16 16 C 1.53713 * 108.77599 * 66.56443 * 4 3 2 17 17 H 1.08996 * 110.33821 * 0.97479 * 16 4 3 18 18 C 1.53000 * 110.34022 * 123.23553 * 16 4 3 19 19 H 1.09001 * 109.47056 * 184.96797 * 1 2 3 20 20 H 1.08990 * 109.47218 * 304.97197 * 1 2 3 21 21 H 1.09001 * 109.46456 * 64.97430 * 1 2 3 22 22 H 1.08994 * 109.47617 * 239.99360 * 2 1 3 23 23 H 1.09005 * 109.46922 * 119.99221 * 2 1 3 24 24 H 1.00904 * 110.99907 * 309.41230 * 3 2 1 25 25 H 0.97004 * 119.99664 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.60136 * 210.48508 * 13 4 3 27 27 H 1.09004 * 109.60200 * 330.80384 * 13 4 3 28 28 H 1.08996 * 111.13196 * 159.34682 * 14 13 4 29 29 H 1.08996 * 111.13333 * 283.49338 * 14 13 4 30 30 H 1.08993 * 109.47256 * 59.99741 * 18 16 4 31 31 H 1.09002 * 109.46868 * 179.97438 * 18 16 4 32 32 H 1.09000 * 109.47381 * 299.99576 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4823 1.4262 -0.1306 5 6 3.9427 2.8552 0.0002 6 1 4.8064 3.1969 -0.5508 7 6 3.2611 3.7265 0.8232 8 7 3.6051 4.9951 0.8666 9 14 1.8490 3.1051 1.8764 10 1 0.5996 3.0958 1.0738 11 1 2.1481 1.7272 2.3425 12 1 1.6767 3.9982 3.0502 13 6 4.1035 0.6008 0.9971 14 6 4.2789 -0.8628 0.5129 15 16 4.8815 -0.5915 -1.2042 16 6 3.8695 0.9042 -1.5235 17 1 2.9769 0.6434 -2.0920 18 6 4.6925 1.9528 -2.2745 19 1 -0.3633 -1.0238 0.0890 20 1 -0.3633 0.5890 0.8420 21 1 -0.3632 0.4347 -0.9312 22 1 1.8934 -0.5139 -0.8898 23 1 1.8933 -0.5137 0.8901 24 1 1.5763 1.9252 -0.7278 25 1 3.1258 5.6080 1.4459 26 1 5.0753 1.0172 1.2625 27 1 3.4478 0.6190 1.8677 28 1 5.0226 -1.3884 1.1119 29 1 3.3275 -1.3946 0.5167 30 1 5.6000 2.1732 -1.7125 31 1 4.9595 1.5683 -3.2589 32 1 4.1046 2.8637 -2.3872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = 9.609923 kcal Electronic energy + Delta-G solvation = -13781.668498 eV Core-core repulsion = 11675.661926 eV Total energy + Delta-G solvation = -2106.006572 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.45253 -33.36192 -31.99458 -31.24313 -29.13150 -26.11356 -23.63979 -22.45649 -21.67546 -18.89420 -16.99339 -16.04453 -15.04934 -14.81777 -14.42204 -13.66263 -13.52763 -13.07090 -12.83315 -12.37960 -11.85977 -11.80058 -11.65464 -11.31476 -10.98640 -10.69323 -10.54330 -10.48979 -10.19996 -10.07650 -9.73130 -9.24240 -8.93524 -8.41010 -7.37499 -7.16290 -6.01672 -4.14900 2.50713 2.97740 3.64651 3.68567 3.89162 4.67251 4.90878 5.22205 5.38088 5.45096 5.54825 5.59228 5.65118 5.73602 5.83913 5.93194 6.01297 6.13164 6.30708 6.41689 6.46907 6.51293 6.63159 6.74311 7.02374 7.10510 7.53495 7.84993 7.98518 8.50244 8.92000 9.58292 11.03773 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.017120 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.766017 B = 1635.161189 C = 2140.862460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.037 3.963 3 N -0.669 5.669 4 C 0.210 3.790 5 C -0.528 4.528 6 H 0.092 0.908 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.980 3.020 10 H -0.300 1.300 11 H -0.279 1.279 12 H -0.350 1.350 13 C -0.117 4.117 14 C -0.076 4.076 15 S -0.343 6.343 16 C -0.034 4.034 17 H 0.074 0.926 18 C -0.111 4.111 19 H 0.054 0.946 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.344 0.656 25 H 0.263 0.737 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -9.485 -1.830 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.092 4.092 3 N -0.303 5.303 4 C 0.119 3.881 5 C -0.566 4.566 6 H 0.110 0.890 7 C -0.132 4.132 8 N -0.532 5.532 9 Si 0.821 3.179 10 H -0.229 1.229 11 H -0.206 1.206 12 H -0.285 1.285 13 C -0.156 4.156 14 C -0.224 4.224 15 S -0.117 6.117 16 C -0.164 4.164 17 H 0.093 0.907 18 C -0.169 4.169 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.163 0.837 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.477 -9.893 -1.798 10.356 hybrid contribution -1.485 0.075 0.310 1.519 sum -3.962 -9.818 -1.488 10.692 Atomic orbital electron populations 1.21843 0.96005 1.01121 1.02096 1.22192 0.94633 0.91746 1.00638 1.60490 1.08266 1.10298 1.51223 1.19610 0.83430 0.97920 0.87123 1.21037 1.15672 0.90606 1.29274 0.88985 1.25227 0.97610 0.94326 0.96009 1.69966 1.41370 1.03551 1.38322 0.85068 0.80779 0.75736 0.76283 1.22905 1.20643 1.28486 1.22901 1.02893 0.89564 1.00257 1.24642 1.02674 1.01682 0.93425 1.87361 1.63258 1.39859 1.21238 1.24473 0.97554 0.92404 1.01966 0.90738 1.21736 1.00709 0.97773 0.96693 0.92714 0.92163 0.93039 0.94730 0.90919 0.83671 0.92749 0.90029 0.89925 0.89198 0.89886 0.91187 0.95311 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.12 37.16 0.38 -1.82 16 2 C 0.04 0.60 4.55 -3.82 -0.02 0.59 16 3 N -0.67 -13.32 0.99 -100.79 -0.10 -13.42 16 4 C 0.21 4.42 0.52 -132.41 -0.07 4.35 16 5 C -0.53 -13.45 7.18 -34.44 -0.25 -13.69 16 6 H 0.09 2.53 5.41 -52.49 -0.28 2.25 16 7 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 8 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 9 Si 0.98 23.97 24.27 -169.99 -4.13 19.84 16 10 H -0.30 -7.20 7.07 56.52 0.40 -6.80 16 11 H -0.28 -6.51 4.91 56.52 0.28 -6.23 16 12 H -0.35 -9.17 7.11 56.52 0.40 -8.77 16 13 C -0.12 -2.34 4.36 -25.62 -0.11 -2.45 16 14 C -0.08 -1.30 6.78 38.30 0.26 -1.04 16 15 S -0.34 -6.40 22.66 -107.50 -2.44 -8.83 16 16 C -0.03 -0.66 2.85 -26.36 -0.08 -0.73 16 17 H 0.07 1.38 6.81 -51.93 -0.35 1.03 16 18 C -0.11 -2.16 7.81 37.16 0.29 -1.87 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.03 0.56 6.37 -51.93 -0.33 0.23 16 23 H 0.07 1.21 5.43 -51.93 -0.28 0.93 16 24 H 0.34 6.87 8.34 -39.29 -0.33 6.54 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.08 1.75 7.83 -51.93 -0.41 1.34 16 27 H 0.08 1.71 5.32 -51.93 -0.28 1.43 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.30 5.51 -51.93 -0.29 1.01 16 30 H 0.07 1.47 6.92 -51.93 -0.36 1.11 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.65 7.23 -51.93 -0.38 1.27 16 LS Contribution 244.78 15.07 3.69 3.69 Total: -1.00 -28.12 244.78 -6.55 -34.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.66 Total: 4.51 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 0.31 Total: -14.78 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.67 Total: -39.09 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.13 Total: 19.84 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -2.44 Total: -8.83 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.12 -6.55 -34.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.275 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds