Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47074 * 2 1 4 4 C 1.46899 * 110.99923 * 185.46375 * 3 2 1 5 5 C 1.50704 * 108.84982 * 185.07422 * 4 3 2 6 6 H 1.07996 * 120.00058 * 212.78795 * 5 4 3 7 7 C 1.37878 * 119.99809 * 32.78497 * 5 4 3 8 8 N 1.31512 * 119.99597 * 184.71945 * 7 5 4 9 9 Si 1.86797 * 120.00099 * 4.71547 * 7 5 4 10 10 H 1.48497 * 109.47086 * 275.43373 * 9 7 5 11 11 H 1.48501 * 109.47329 * 35.43394 * 9 7 5 12 12 H 1.48497 * 109.46948 * 155.43349 * 9 7 5 13 13 C 1.52941 * 108.89001 * 303.65195 * 4 3 2 14 14 C 1.55151 * 108.96247 * 90.54897 * 13 4 3 15 15 S 1.83989 * 100.90500 * 41.44345 * 14 13 4 16 16 C 1.53713 * 108.77599 * 66.56443 * 4 3 2 17 17 H 1.08996 * 110.33821 * 0.97479 * 16 4 3 18 18 C 1.53000 * 110.34022 * 123.23553 * 16 4 3 19 19 H 1.09001 * 109.47056 * 184.96797 * 1 2 3 20 20 H 1.08990 * 109.47218 * 304.97197 * 1 2 3 21 21 H 1.09001 * 109.46456 * 64.97430 * 1 2 3 22 22 H 1.08994 * 109.47617 * 239.99360 * 2 1 3 23 23 H 1.09005 * 109.46922 * 119.99221 * 2 1 3 24 24 H 1.00904 * 110.99907 * 309.41230 * 3 2 1 25 25 H 0.97004 * 119.99664 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.60136 * 210.48508 * 13 4 3 27 27 H 1.09004 * 109.60200 * 330.80384 * 13 4 3 28 28 H 1.08996 * 111.13196 * 159.34682 * 14 13 4 29 29 H 1.08996 * 111.13333 * 283.49338 * 14 13 4 30 30 H 1.08993 * 109.47256 * 59.99741 * 18 16 4 31 31 H 1.09002 * 109.46868 * 179.97438 * 18 16 4 32 32 H 1.09000 * 109.47381 * 299.99576 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4823 1.4262 -0.1306 5 6 3.9427 2.8552 0.0002 6 1 4.8064 3.1969 -0.5508 7 6 3.2611 3.7265 0.8232 8 7 3.6051 4.9951 0.8666 9 14 1.8490 3.1051 1.8764 10 1 0.5996 3.0958 1.0738 11 1 2.1481 1.7272 2.3425 12 1 1.6767 3.9982 3.0502 13 6 4.1035 0.6008 0.9971 14 6 4.2789 -0.8628 0.5129 15 16 4.8815 -0.5915 -1.2042 16 6 3.8695 0.9042 -1.5235 17 1 2.9769 0.6434 -2.0920 18 6 4.6925 1.9528 -2.2745 19 1 -0.3633 -1.0238 0.0890 20 1 -0.3633 0.5890 0.8420 21 1 -0.3632 0.4347 -0.9312 22 1 1.8934 -0.5139 -0.8898 23 1 1.8933 -0.5137 0.8901 24 1 1.5763 1.9252 -0.7278 25 1 3.1258 5.6080 1.4459 26 1 5.0753 1.0172 1.2625 27 1 3.4478 0.6190 1.8677 28 1 5.0226 -1.3884 1.1119 29 1 3.3275 -1.3946 0.5167 30 1 5.6000 2.1732 -1.7125 31 1 4.9595 1.5683 -3.2589 32 1 4.1046 2.8637 -2.3872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = -7.713210 kcal Electronic energy + Delta-G solvation = -13782.419685 eV Core-core repulsion = 11675.661926 eV Total energy + Delta-G solvation = -2106.757760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06732 -34.92988 -33.90185 -32.80393 -30.59577 -27.87129 -25.29555 -24.07703 -23.00875 -20.68122 -18.73903 -17.57162 -16.76895 -16.54742 -15.98198 -15.16065 -15.04534 -14.66582 -14.39634 -14.02891 -13.58862 -13.20464 -13.13094 -12.77490 -12.68364 -12.34211 -12.12241 -12.01016 -11.84157 -11.75133 -11.48090 -10.94411 -10.77035 -10.41231 -9.00142 -8.63189 -8.13275 -6.27165 1.03094 1.48000 1.68179 1.69071 1.93323 2.66437 3.16864 3.44066 3.85885 4.08725 4.09749 4.22037 4.24334 4.37238 4.41240 4.48090 4.74844 4.82418 4.91305 4.95439 5.01613 5.08440 5.14232 5.29323 5.34802 5.46118 5.71230 6.15633 6.25620 6.61549 6.83996 7.48917 8.94851 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.017120 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.766017 B = 1635.161189 C = 2140.862460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.036 3.964 3 N -0.680 5.680 4 C 0.211 3.789 5 C -0.514 4.514 6 H 0.061 0.939 7 C 0.022 3.978 8 N -0.949 5.949 9 Si 1.035 2.965 10 H -0.292 1.292 11 H -0.260 1.260 12 H -0.379 1.379 13 C -0.116 4.116 14 C -0.062 4.062 15 S -0.344 6.344 16 C -0.034 4.034 17 H 0.090 0.910 18 C -0.103 4.103 19 H 0.082 0.918 20 H 0.047 0.953 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.343 0.657 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -12.480 -2.070 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 N -0.314 5.314 4 C 0.119 3.881 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.588 5.588 9 Si 0.876 3.124 10 H -0.220 1.220 11 H -0.186 1.186 12 H -0.317 1.317 13 C -0.155 4.155 14 C -0.209 4.209 15 S -0.118 6.118 16 C -0.164 4.164 17 H 0.108 0.892 18 C -0.162 4.162 19 H 0.101 0.899 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.162 0.838 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.585 -12.935 -2.062 13.580 hybrid contribution -1.055 0.959 0.317 1.461 sum -4.640 -11.976 -1.744 12.962 Atomic orbital electron populations 1.21827 0.94126 1.02828 1.01913 1.22299 0.96200 0.89376 1.01257 1.60230 1.07247 1.12794 1.51140 1.19480 0.84561 0.95346 0.88675 1.21288 1.13927 0.92972 1.27064 0.92070 1.25932 0.99991 0.94233 0.97483 1.70101 1.43452 1.05029 1.40215 0.84128 0.78722 0.75379 0.74152 1.22021 1.18626 1.31712 1.22699 1.01525 0.91678 0.99595 1.24681 1.04583 0.99603 0.92065 1.87410 1.63439 1.38485 1.22433 1.24331 0.98259 0.92921 1.00857 0.89210 1.21589 0.99471 0.97436 0.97663 0.89869 0.93415 0.92434 0.93693 0.90459 0.83802 0.93282 0.92100 0.90185 0.86884 0.87568 0.93407 0.93115 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 10.12 71.98 0.73 -2.93 16 2 C 0.04 1.06 4.55 86.30 0.39 1.45 16 3 N -0.68 -25.38 0.99 -472.80 -0.47 -25.84 16 4 C 0.21 8.55 0.52 3.00 0.00 8.55 16 5 C -0.51 -26.55 7.18 25.60 0.18 -26.37 16 6 H 0.06 3.50 5.41 -2.91 -0.02 3.48 16 7 C 0.02 1.22 5.46 84.66 0.46 1.68 16 8 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 9 Si 1.03 49.60 24.27 68.60 1.66 51.26 16 10 H -0.29 -13.39 7.07 99.48 0.70 -12.68 16 11 H -0.26 -11.39 4.91 99.48 0.49 -10.91 16 12 H -0.38 -19.92 7.11 99.48 0.71 -19.21 16 13 C -0.12 -4.36 4.36 31.31 0.14 -4.23 16 14 C -0.06 -1.85 6.78 72.72 0.49 -1.36 16 15 S -0.34 -11.74 22.66 -56.49 -1.28 -13.02 16 16 C -0.03 -1.24 2.85 30.83 0.09 -1.15 16 17 H 0.09 3.05 6.81 -2.39 -0.02 3.04 16 18 C -0.10 -3.99 7.81 71.98 0.56 -3.42 16 19 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.04 1.24 6.37 -2.39 -0.02 1.23 16 23 H 0.08 2.19 5.43 -2.38 -0.01 2.18 16 24 H 0.34 12.96 8.34 -89.69 -0.75 12.21 16 25 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.06 2.54 7.83 -2.38 -0.02 2.52 16 27 H 0.08 3.07 5.32 -2.38 -0.01 3.06 16 28 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.11 2.76 5.51 -2.39 -0.01 2.74 16 30 H 0.05 2.03 6.92 -2.39 -0.02 2.02 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.57 7.23 -2.39 -0.02 2.55 16 Total: -1.00 -61.07 244.78 3.41 -57.66 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.14 Total: 15.54 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 3.05 Total: -27.78 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -0.17 Total: -83.67 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.66 Total: 51.26 kcal Atomic # 16 Polarization: -11.74 SS G_CDS: -1.28 Total: -13.02 kcal Total: -61.07 3.41 -57.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.945 kcal (2) G-P(sol) polarization free energy of solvation -61.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds