Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47131 * 2 1 4 4 C 1.46907 * 110.99976 * 175.01743 * 3 2 1 5 5 C 1.50696 * 108.85058 * 304.88329 * 4 3 2 6 6 H 1.07996 * 120.00524 * 125.33661 * 5 4 3 7 7 C 1.37889 * 119.99641 * 305.33219 * 5 4 3 8 8 N 1.31510 * 119.99899 * 355.02065 * 7 5 4 9 9 Si 1.86798 * 119.99633 * 175.01781 * 7 5 4 10 10 H 1.48501 * 109.47239 * 60.00429 * 9 7 5 11 11 H 1.48502 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47487 * 299.99902 * 9 7 5 13 13 C 1.52940 * 108.88712 * 186.30264 * 4 3 2 14 14 C 1.54834 * 109.12619 * 269.34848 * 13 4 3 15 15 S 1.83990 * 100.88219 * 318.56846 * 14 13 4 16 16 C 1.53710 * 108.88402 * 63.45763 * 4 3 2 17 17 H 1.08997 * 110.34362 * 358.98719 * 16 4 3 18 18 C 1.53007 * 110.33617 * 236.84086 * 16 4 3 19 19 H 1.08997 * 109.47015 * 59.99892 * 1 2 3 20 20 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46836 * 299.99949 * 1 2 3 22 22 H 1.09006 * 109.47102 * 119.99936 * 2 1 3 23 23 H 1.09003 * 109.47505 * 239.99753 * 2 1 3 24 24 H 1.00896 * 111.00218 * 298.97272 * 3 2 1 25 25 H 0.97005 * 119.99802 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.60091 * 29.23826 * 13 4 3 27 27 H 1.08995 * 109.60436 * 149.37796 * 13 4 3 28 28 H 1.09001 * 111.16643 * 200.65868 * 14 13 4 29 29 H 1.08996 * 111.11922 * 76.46372 * 14 13 4 30 30 H 1.08997 * 109.47239 * 60.00456 * 18 16 4 31 31 H 1.09001 * 109.46500 * 180.02562 * 18 16 4 32 32 H 1.08995 * 109.47293 * 299.99906 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4833 1.4259 0.1191 5 6 3.8934 0.6584 1.3494 6 1 4.6111 -0.1447 1.2708 7 6 3.3521 0.9815 2.5758 8 7 2.5540 2.0206 2.6890 9 14 3.7525 -0.0567 4.0762 10 1 5.2181 -0.0374 4.3146 11 1 3.0503 0.4959 5.2622 12 1 3.3070 -1.4542 3.8444 13 6 3.9271 2.8815 0.2728 14 6 4.2051 3.4777 -1.1289 15 16 5.0750 2.0727 -1.9377 16 6 4.1020 0.7527 -1.1165 17 1 3.3190 0.3877 -1.7811 18 6 5.0177 -0.3976 -0.6928 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.7100 1.8780 -0.8240 25 1 2.1729 2.2477 3.5517 26 1 3.1392 3.4542 0.7618 27 1 4.8348 2.9255 0.8745 28 1 4.8503 4.3538 -1.0630 29 1 3.2755 3.7147 -1.6463 30 1 4.4398 -1.1363 -0.1375 31 1 5.4486 -0.8640 -1.5787 32 1 5.8172 -0.0115 -0.0605 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = 7.030584 kcal Electronic energy + Delta-G solvation = -13671.335749 eV Core-core repulsion = 11565.217328 eV Total energy + Delta-G solvation = -2106.118421 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.69872 -32.87518 -31.91226 -31.10463 -28.30652 -25.66543 -23.70136 -22.24227 -20.80906 -18.95634 -16.02034 -15.69419 -15.02405 -14.35747 -14.12726 -13.60847 -13.07407 -12.92585 -12.56463 -12.23442 -11.57486 -11.43537 -11.25710 -10.89395 -10.85617 -10.65304 -10.45965 -10.30060 -9.94200 -9.75571 -9.61253 -9.11331 -8.75256 -8.33998 -7.06542 -6.82410 -5.92392 -4.03010 2.73687 3.18903 3.30545 3.36012 3.39495 4.42967 5.24831 5.51536 5.71740 5.81246 5.87481 5.98647 6.04564 6.14728 6.18518 6.24216 6.39767 6.55273 6.62343 6.63903 6.94773 7.02859 7.04472 7.12642 7.30859 7.68257 7.87018 8.14793 8.50203 8.78836 9.08844 9.62235 11.10408 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.014262 C = 0.012339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.636538 B = 1962.760588 C = 2268.634609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 N -0.643 5.643 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.073 0.927 7 C 0.088 3.912 8 N -0.840 5.840 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C -0.087 4.087 14 C -0.068 4.068 15 S -0.362 6.362 16 C -0.044 4.044 17 H 0.071 0.929 18 C -0.111 4.111 19 H 0.037 0.963 20 H 0.041 0.959 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.000 1.000 24 H 0.296 0.704 25 H 0.255 0.745 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -0.962 -4.462 4.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 N -0.271 5.271 4 C 0.153 3.847 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.120 4.120 8 N -0.473 5.473 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.126 4.126 14 C -0.216 4.216 15 S -0.136 6.136 16 C -0.174 4.174 17 H 0.089 0.911 18 C -0.170 4.170 19 H 0.056 0.944 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.018 0.982 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.099 -0.771 -4.453 4.521 hybrid contribution -0.525 -0.778 0.676 1.157 sum -0.427 -1.549 -3.777 4.105 Atomic orbital electron populations 1.21750 0.97499 0.99642 1.01247 1.21684 0.92820 0.91647 0.99913 1.60828 1.12067 1.12784 1.41373 1.19089 0.83710 0.91555 0.90358 1.21211 1.26918 1.19052 0.90480 0.90884 1.24909 0.94479 0.94538 0.98046 1.70076 1.29361 1.24425 1.23468 0.86945 0.78487 0.81043 0.83138 1.20388 1.21486 1.20406 1.22286 1.02604 0.96420 0.91304 1.24434 1.00281 0.96457 1.00386 1.87245 1.55229 1.07639 1.63504 1.24669 0.97377 0.95640 0.99707 0.91120 1.21751 0.99349 0.96736 0.99155 0.94388 0.93992 0.92211 0.89617 0.98194 0.88788 0.93520 0.88678 0.91548 0.89566 0.90819 0.90977 0.95515 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.21 37.16 0.38 -2.15 16 2 C 0.07 1.40 5.70 -3.82 -0.02 1.38 16 3 N -0.64 -13.93 4.94 -100.78 -0.50 -14.42 16 4 C 0.24 5.41 0.48 -132.41 -0.06 5.34 16 5 C -0.54 -13.16 5.30 -34.44 -0.18 -13.34 16 6 H 0.07 1.78 4.55 -52.49 -0.24 1.54 16 7 C 0.09 2.22 4.85 -17.82 -0.09 2.13 16 8 N -0.84 -22.01 11.30 55.43 0.63 -21.38 16 9 Si 0.88 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C -0.09 -1.90 4.63 -25.80 -0.12 -2.02 16 14 C -0.07 -1.27 7.51 38.12 0.29 -0.98 16 15 S -0.36 -7.25 22.66 -107.50 -2.44 -9.69 16 16 C -0.04 -0.89 3.04 -26.36 -0.08 -0.97 16 17 H 0.07 1.44 6.48 -51.93 -0.34 1.11 16 18 C -0.11 -2.19 7.74 37.16 0.29 -1.90 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.09 1.97 6.47 -51.93 -0.34 1.63 16 23 H 0.00 0.00 6.58 -51.93 -0.34 -0.34 16 24 H 0.30 6.07 8.80 -39.29 -0.35 5.72 16 25 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.09 2.26 7.26 -51.93 -0.38 1.89 16 27 H 0.07 1.58 7.82 -51.93 -0.41 1.17 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.43 6.91 -51.93 -0.36 1.07 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.45 7.24 -51.93 -0.38 1.07 16 LS Contribution 258.50 15.07 3.90 3.90 Total: -1.00 -25.32 258.50 -7.82 -33.14 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.79 Total: 5.91 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 0.40 Total: -12.52 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.13 Total: -35.80 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -2.44 Total: -9.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -25.32 -7.82 -33.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -25.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds