Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47131 * 2 1 4 4 C 1.46907 * 110.99976 * 175.01743 * 3 2 1 5 5 C 1.50696 * 108.85058 * 304.88329 * 4 3 2 6 6 H 1.07996 * 120.00524 * 125.33661 * 5 4 3 7 7 C 1.37889 * 119.99641 * 305.33219 * 5 4 3 8 8 N 1.31510 * 119.99899 * 355.02065 * 7 5 4 9 9 Si 1.86798 * 119.99633 * 175.01781 * 7 5 4 10 10 H 1.48501 * 109.47239 * 60.00429 * 9 7 5 11 11 H 1.48502 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47487 * 299.99902 * 9 7 5 13 13 C 1.52940 * 108.88712 * 186.30264 * 4 3 2 14 14 C 1.54834 * 109.12619 * 269.34848 * 13 4 3 15 15 S 1.83990 * 100.88219 * 318.56846 * 14 13 4 16 16 C 1.53710 * 108.88402 * 63.45763 * 4 3 2 17 17 H 1.08997 * 110.34362 * 358.98719 * 16 4 3 18 18 C 1.53007 * 110.33617 * 236.84086 * 16 4 3 19 19 H 1.08997 * 109.47015 * 59.99892 * 1 2 3 20 20 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46836 * 299.99949 * 1 2 3 22 22 H 1.09006 * 109.47102 * 119.99936 * 2 1 3 23 23 H 1.09003 * 109.47505 * 239.99753 * 2 1 3 24 24 H 1.00896 * 111.00218 * 298.97272 * 3 2 1 25 25 H 0.97005 * 119.99802 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.60091 * 29.23826 * 13 4 3 27 27 H 1.08995 * 109.60436 * 149.37796 * 13 4 3 28 28 H 1.09001 * 111.16643 * 200.65868 * 14 13 4 29 29 H 1.08996 * 111.11922 * 76.46372 * 14 13 4 30 30 H 1.08997 * 109.47239 * 60.00456 * 18 16 4 31 31 H 1.09001 * 109.46500 * 180.02562 * 18 16 4 32 32 H 1.08995 * 109.47293 * 299.99906 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4833 1.4259 0.1191 5 6 3.8934 0.6584 1.3494 6 1 4.6111 -0.1447 1.2708 7 6 3.3521 0.9815 2.5758 8 7 2.5540 2.0206 2.6890 9 14 3.7525 -0.0567 4.0762 10 1 5.2181 -0.0374 4.3146 11 1 3.0503 0.4959 5.2622 12 1 3.3070 -1.4542 3.8444 13 6 3.9271 2.8815 0.2728 14 6 4.2051 3.4777 -1.1289 15 16 5.0750 2.0727 -1.9377 16 6 4.1020 0.7527 -1.1165 17 1 3.3190 0.3877 -1.7811 18 6 5.0177 -0.3976 -0.6928 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.7100 1.8780 -0.8240 25 1 2.1729 2.2477 3.5517 26 1 3.1392 3.4542 0.7618 27 1 4.8348 2.9255 0.8745 28 1 4.8503 4.3538 -1.0630 29 1 3.2755 3.7147 -1.6463 30 1 4.4398 -1.1363 -0.1375 31 1 5.4486 -0.8640 -1.5787 32 1 5.8172 -0.0115 -0.0605 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = -7.110732 kcal Electronic energy + Delta-G solvation = -13671.948962 eV Core-core repulsion = 11565.217328 eV Total energy + Delta-G solvation = -2106.731634 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41824 -34.50721 -33.80577 -32.73980 -29.88371 -27.51910 -25.35402 -23.91096 -22.42605 -20.75463 -17.81574 -17.33678 -16.80915 -16.05848 -15.89971 -15.19256 -14.77609 -14.46284 -14.18207 -13.93561 -13.28830 -13.06136 -12.89503 -12.71434 -12.46402 -12.39044 -12.09115 -11.92497 -11.61579 -11.56200 -11.31007 -10.84429 -10.53881 -10.24792 -8.68365 -8.47132 -7.85923 -5.98677 1.14854 1.45328 1.49086 1.51861 1.59733 2.53032 3.35750 3.84867 4.07013 4.24266 4.30777 4.41954 4.48348 4.52899 4.68634 4.73507 4.88922 5.00952 5.03159 5.09223 5.29689 5.33103 5.42705 5.49302 5.59658 5.89198 5.92138 6.32705 6.71943 7.00769 7.33860 7.67697 9.14696 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.014262 C = 0.012339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.636538 B = 1962.760588 C = 2268.634609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.072 3.928 3 N -0.654 5.654 4 C 0.240 3.760 5 C -0.540 4.540 6 H 0.070 0.930 7 C 0.052 3.948 8 N -0.861 5.861 9 Si 0.921 3.079 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.277 1.277 13 C -0.079 4.079 14 C -0.056 4.056 15 S -0.362 6.362 16 C -0.042 4.042 17 H 0.075 0.925 18 C -0.105 4.105 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.010 0.990 24 H 0.305 0.695 25 H 0.249 0.751 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -1.261 -5.597 5.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 N -0.283 5.283 4 C 0.149 3.851 5 C -0.579 4.579 6 H 0.088 0.912 7 C -0.153 4.153 8 N -0.496 5.496 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.202 1.202 13 C -0.118 4.118 14 C -0.204 4.204 15 S -0.136 6.136 16 C -0.173 4.173 17 H 0.094 0.906 18 C -0.163 4.163 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.028 0.972 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.019 -1.082 -5.593 5.697 hybrid contribution -0.458 -0.689 0.999 1.297 sum -0.477 -1.770 -4.593 4.946 Atomic orbital electron populations 1.21655 0.95353 1.01063 1.01113 1.21613 0.94573 0.90711 0.98809 1.60722 1.11737 1.13774 1.42052 1.19051 0.84334 0.91431 0.90306 1.21494 1.26206 1.18724 0.91460 0.91175 1.25372 0.94782 0.95298 0.99854 1.70185 1.30571 1.25524 1.23330 0.86230 0.77925 0.79999 0.80941 1.20521 1.22030 1.20242 1.22053 1.00518 0.96500 0.92760 1.24411 1.01412 0.96485 0.98062 1.87247 1.55419 1.07792 1.63180 1.24570 0.97681 0.95953 0.99085 0.90634 1.21646 0.98670 0.96387 0.99622 0.92697 0.91837 0.94067 0.92630 0.97220 0.87855 0.94183 0.90736 0.94099 0.87599 0.89119 0.91446 0.93604 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 10.21 71.98 0.74 -3.74 16 2 C 0.07 2.86 5.70 86.30 0.49 3.35 16 3 N -0.65 -27.73 4.94 -472.78 -2.34 -30.06 16 4 C 0.24 10.47 0.48 3.00 0.00 10.47 16 5 C -0.54 -26.35 5.30 25.60 0.14 -26.22 16 6 H 0.07 3.41 4.55 -2.91 -0.01 3.40 16 7 C 0.05 2.62 4.85 84.66 0.41 3.03 16 8 N -0.86 -45.56 11.30 21.45 0.24 -45.32 16 9 Si 0.92 41.47 29.54 68.60 2.03 43.49 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 C -0.08 -3.41 4.63 31.20 0.14 -3.26 16 14 C -0.06 -1.99 7.51 72.61 0.55 -1.44 16 15 S -0.36 -13.72 22.66 -56.49 -1.28 -15.00 16 16 C -0.04 -1.67 3.04 30.84 0.09 -1.58 16 17 H 0.08 2.91 6.48 -2.39 -0.02 2.89 16 18 C -0.10 -3.97 7.74 71.98 0.56 -3.41 16 19 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 2.53 6.47 -2.38 -0.02 2.51 16 23 H 0.01 0.37 6.58 -2.39 -0.02 0.35 16 24 H 0.31 11.97 8.80 -89.70 -0.79 11.18 16 25 H 0.25 13.06 8.31 -92.70 -0.77 12.29 16 26 H 0.07 3.55 7.26 -2.39 -0.02 3.53 16 27 H 0.04 1.94 7.82 -2.39 -0.02 1.92 16 28 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 2.24 7.24 -2.39 -0.02 2.22 16 Total: -1.00 -52.32 258.50 2.08 -50.24 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.32 Total: 19.47 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.12 Total: -22.80 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.09 Total: -75.39 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: -13.72 SS G_CDS: -1.28 Total: -15.00 kcal Total: -52.32 2.08 -50.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.124 kcal (2) G-P(sol) polarization free energy of solvation -52.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds