Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46897 * 109.46887 * 2 1 4 4 C 1.46900 * 110.99705 * 183.26283 * 3 2 1 5 5 C 1.50697 * 109.39362 * 294.88415 * 4 3 2 6 6 H 1.07994 * 120.00391 * 145.31981 * 5 4 3 7 7 C 1.37878 * 119.99842 * 325.31705 * 5 4 3 8 8 N 1.31512 * 120.00315 * 175.34437 * 7 5 4 9 9 Si 1.86803 * 119.99802 * 355.34203 * 7 5 4 10 10 H 1.48504 * 109.47000 * 93.67190 * 9 7 5 11 11 H 1.48498 * 109.47444 * 333.66980 * 9 7 5 12 12 H 1.48506 * 109.47048 * 213.66752 * 9 7 5 13 13 C 1.52577 * 109.39040 * 175.07905 * 4 3 2 14 14 C 1.52583 * 110.72979 * 169.27612 * 13 4 3 15 15 C 1.53106 * 109.95292 * 70.67343 * 14 13 4 16 16 S 1.81745 * 108.84181 * 296.97993 * 15 14 13 17 17 C 1.53099 * 109.30750 * 54.63452 * 4 3 2 18 18 H 1.08999 * 109.47148 * 182.12350 * 1 2 3 19 19 H 1.09003 * 109.46794 * 302.12272 * 1 2 3 20 20 H 1.08998 * 109.46964 * 62.12264 * 1 2 3 21 21 H 1.08996 * 109.46988 * 239.99877 * 2 1 3 22 22 H 1.09003 * 109.46499 * 120.00178 * 2 1 3 23 23 H 1.00901 * 111.00183 * 307.21965 * 3 2 1 24 24 H 0.96999 * 120.00197 * 180.02562 * 8 7 5 25 25 H 1.09003 * 109.23108 * 289.59823 * 13 4 3 26 26 H 1.09001 * 109.22799 * 48.99424 * 13 4 3 27 27 H 1.08998 * 109.39354 * 190.82173 * 14 13 4 28 28 H 1.08997 * 109.38498 * 310.63043 * 14 13 4 29 29 H 1.08995 * 109.57275 * 56.78786 * 15 14 13 30 30 H 1.09004 * 109.57174 * 177.03861 * 15 14 13 31 31 H 1.09000 * 109.57791 * 302.93129 * 17 4 3 32 32 H 1.09004 * 109.57561 * 63.31914 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4861 1.4249 -0.0781 5 6 4.0704 0.8162 1.1706 6 1 4.9893 0.2514 1.1170 7 6 3.4318 0.9805 2.3815 8 7 3.8906 0.3741 3.4545 9 14 1.9150 2.0646 2.4980 10 1 0.6969 1.2303 2.3390 11 1 1.9560 3.0903 1.4249 12 1 1.8863 2.7351 3.8228 13 6 3.9476 2.8741 -0.1990 14 6 5.4591 2.9765 -0.0171 15 6 6.1733 2.3736 -1.2297 16 16 5.7670 0.6050 -1.3307 17 6 3.9500 0.6252 -1.2984 18 1 -0.3633 -1.0269 0.0381 19 1 -0.3633 0.5465 0.8704 20 1 -0.3633 0.4805 -0.9084 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.6030 1.9158 -0.7501 24 1 3.4412 0.4894 4.3063 25 1 3.6780 3.2558 -1.1838 26 1 3.4533 3.4733 0.5657 27 1 5.7412 4.0244 0.0849 28 1 5.7530 2.4334 0.8811 29 1 5.8405 2.8772 -2.1372 30 1 7.2506 2.4971 -1.1177 31 1 3.5745 -0.3958 -1.2302 32 1 3.5738 1.0947 -2.2073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261154692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = 4.241928 kcal Electronic energy + Delta-G solvation = -13739.550742 eV Core-core repulsion = 11633.311396 eV Total energy + Delta-G solvation = -2106.239346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.08553 -34.16938 -32.02214 -30.66272 -27.48112 -26.59002 -25.07732 -22.32428 -20.55362 -19.12328 -16.72736 -15.73868 -15.26021 -14.66537 -14.10135 -13.69001 -13.60997 -13.07423 -12.68897 -12.43474 -12.31743 -11.88535 -11.62515 -11.04086 -10.78466 -10.67850 -10.41920 -10.17661 -9.96739 -9.81199 -9.51329 -9.27942 -8.93230 -8.30205 -7.29404 -6.68543 -5.87565 -3.97647 2.55524 3.28880 3.69454 3.75323 3.96755 4.80013 5.00526 5.33766 5.47677 5.58822 5.66717 5.69775 5.83708 5.92482 5.97470 6.00676 6.07375 6.27156 6.30752 6.37719 6.48576 6.67159 6.77722 6.92866 7.14381 7.21784 7.63596 7.77942 8.23344 8.67177 9.16679 9.74195 11.18015 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.015679 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.439607 B = 1785.411435 C = 2127.953797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.052 3.948 3 N -0.665 5.665 4 C 0.209 3.791 5 C -0.511 4.511 6 H 0.093 0.907 7 C 0.073 3.927 8 N -0.901 5.901 9 Si 0.962 3.038 10 H -0.293 1.293 11 H -0.269 1.269 12 H -0.351 1.351 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.074 4.074 16 S -0.262 6.262 17 C -0.088 4.088 18 H 0.053 0.947 19 H 0.063 0.937 20 H 0.043 0.957 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.319 0.681 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 3.242 -9.000 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.298 5.298 4 C 0.118 3.882 5 C -0.549 4.549 6 H 0.111 0.889 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.802 3.198 10 H -0.222 1.222 11 H -0.196 1.196 12 H -0.286 1.286 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.223 4.223 16 S -0.037 6.037 17 C -0.238 4.238 18 H 0.072 0.928 19 H 0.082 0.918 20 H 0.062 0.938 21 H 0.045 0.955 22 H 0.110 0.890 23 H 0.136 0.864 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.436 2.348 -8.237 8.685 hybrid contribution -1.548 1.283 -0.748 2.145 sum -2.984 3.631 -8.985 10.140 Atomic orbital electron populations 1.21965 0.96743 1.01139 1.01585 1.21949 0.93324 0.90557 1.01858 1.60579 1.08923 1.12394 1.47863 1.19170 0.83348 0.91686 0.93958 1.20898 1.10603 1.34661 0.88748 0.88917 1.25153 0.97808 0.94892 0.95141 1.69998 1.41137 1.42695 0.99967 0.85509 0.81895 0.80802 0.71556 1.22171 1.19625 1.28595 1.21795 0.95740 0.98588 0.99322 1.21659 0.95167 0.99490 0.98876 1.23325 1.03031 0.94711 1.01214 1.86268 1.09194 1.11459 1.96748 1.24216 0.93118 1.05240 1.01261 0.92831 0.91848 0.93787 0.95521 0.89015 0.86372 0.93128 0.95473 0.90680 0.93069 0.87903 0.91634 0.89105 0.88466 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.07 37.16 0.37 -2.19 16 2 C 0.05 1.00 4.65 -3.82 -0.02 0.98 16 3 N -0.67 -13.39 1.77 -101.31 -0.18 -13.57 16 4 C 0.21 4.44 0.32 -132.92 -0.04 4.39 16 5 C -0.51 -13.28 5.63 -34.44 -0.19 -13.47 16 6 H 0.09 2.70 6.91 -52.49 -0.36 2.34 16 7 C 0.07 2.03 4.79 -17.82 -0.09 1.95 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 9 Si 0.96 24.00 23.42 -169.99 -3.98 20.02 16 10 H -0.29 -7.17 5.24 56.52 0.30 -6.87 16 11 H -0.27 -6.31 4.73 56.52 0.27 -6.04 16 12 H -0.35 -9.43 7.11 56.52 0.40 -9.03 16 13 C -0.12 -2.31 4.51 -27.16 -0.12 -2.43 16 14 C -0.11 -2.13 5.60 -26.89 -0.15 -2.28 16 15 C -0.07 -1.26 6.46 37.21 0.24 -1.02 16 16 S -0.26 -5.14 20.80 -107.50 -2.24 -7.38 16 17 C -0.09 -1.71 4.95 37.21 0.18 -1.53 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 H 0.06 1.15 6.44 -51.93 -0.33 0.81 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.03 0.48 5.95 -51.93 -0.31 0.17 16 22 H 0.09 2.10 6.47 -51.93 -0.34 1.76 16 23 H 0.32 5.65 8.62 -39.29 -0.34 5.31 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.07 1.61 5.49 -51.93 -0.29 1.32 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 2.29 6.60 -51.93 -0.34 1.94 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.94 6.08 -51.93 -0.32 1.63 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -28.95 241.82 -6.75 -35.70 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.95 Total: 3.62 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 0.19 Total: -15.61 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.59 Total: -40.01 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -3.98 Total: 20.02 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.24 Total: -7.38 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.95 -6.75 -35.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds