Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81396 * 103.00135 * 2 1 4 4 H 1.09002 * 109.47587 * 304.99973 * 3 2 1 5 5 C 1.53002 * 109.47197 * 65.00247 * 3 2 1 6 6 C 1.53000 * 109.47233 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 3 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 9 9 C 1.52997 * 109.47360 * 185.00065 * 3 2 1 10 10 H 1.09001 * 109.47289 * 60.00264 * 9 3 2 11 11 N 1.46496 * 109.47294 * 300.00139 * 9 3 2 12 12 C 1.36939 * 120.00484 * 154.99671 * 11 9 3 13 13 H 1.08005 * 119.99602 * 0.02562 * 12 11 9 14 14 C 1.38805 * 120.00359 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00130 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00162 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47183 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47030 * 120.00412 * 16 14 12 19 19 H 1.48496 * 109.47318 * 240.00302 * 16 14 12 20 20 H 1.09003 * 109.47415 * 300.00015 * 1 2 3 21 21 H 1.08999 * 109.47499 * 59.99656 * 1 2 3 22 22 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47063 * 59.99974 * 5 3 2 24 24 H 1.09004 * 109.46733 * 299.99687 * 5 3 2 25 25 H 1.09002 * 109.47398 * 59.99826 * 6 5 3 26 26 H 1.09001 * 109.47194 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 29 29 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 31 31 H 0.97001 * 119.99753 * 334.99414 * 11 9 3 32 32 H 0.97000 * 120.00591 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 2.0865 3.8925 1.3071 7 6 3.6012 4.0666 1.1811 8 6 4.0806 3.4326 -0.1262 9 6 3.7369 1.9412 -0.1257 10 1 4.0784 1.4895 -1.0571 11 7 4.3990 1.2871 1.0056 12 6 5.6926 0.8542 0.8850 13 1 6.2248 0.9953 -0.0441 14 6 6.3201 0.2350 1.9572 15 7 5.6716 0.0635 3.0897 16 14 8.0849 -0.3549 1.7928 17 1 8.5855 -0.0447 0.4297 18 1 8.9325 0.3332 2.7995 19 1 8.1397 -1.8215 2.0189 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 2.2354 1.9149 2.1491 24 1 0.6635 2.2779 1.3969 25 1 1.5935 4.3788 0.4653 26 1 1.7455 4.3441 2.2387 27 1 3.8462 5.1287 1.1814 28 1 4.0942 3.5803 2.0229 29 1 5.1598 3.5563 -0.2158 30 1 3.5876 3.9190 -0.9680 31 1 3.9211 1.1608 1.8402 32 1 6.1100 -0.3696 3.8388 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300384945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = -24.445069 kcal Electronic energy + Delta-G solvation = -13174.496533 eV Core-core repulsion = 11067.013225 eV Total energy + Delta-G solvation = -2107.483307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.73602 -35.43808 -32.83918 -31.82514 -29.83382 -29.50591 -25.64435 -23.52234 -23.08732 -20.07274 -19.18095 -17.42092 -16.54263 -16.15275 -15.73584 -15.42353 -15.04001 -14.44961 -14.34281 -14.12455 -13.61475 -13.47160 -12.99589 -12.85393 -12.73262 -12.59034 -12.18790 -12.06339 -11.81413 -11.56592 -11.23464 -10.96350 -10.86574 -10.39476 -8.92090 -8.48023 -7.87401 -5.12772 0.91428 1.46422 1.47473 1.56640 1.90230 2.59280 3.45581 3.75057 3.81043 4.14585 4.17884 4.32111 4.38653 4.41141 4.43404 4.54002 4.64053 4.74465 4.88267 4.94227 5.03494 5.13223 5.30188 5.34406 5.37109 5.53134 5.54995 5.71079 6.34308 7.41714 8.18982 8.43509 9.36286 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.010908 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.703209 B = 2566.387658 C = 3086.901606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.316 6.316 3 C -0.036 4.036 4 H 0.107 0.893 5 C -0.107 4.107 6 C -0.103 4.103 7 C -0.112 4.112 8 C -0.122 4.122 9 C 0.186 3.814 10 H 0.037 0.963 11 N -0.719 5.719 12 C -0.228 4.228 13 H 0.069 0.931 14 C -0.075 4.075 15 N -0.967 5.967 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.295 1.295 19 H -0.298 1.298 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.104 0.896 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.377 0.623 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 7.087 -6.631 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.088 6.088 3 C -0.165 4.165 4 H 0.125 0.875 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.164 4.164 9 C 0.076 3.924 10 H 0.055 0.945 11 N -0.360 5.360 12 C -0.360 4.360 13 H 0.087 0.913 14 C -0.267 4.267 15 N -0.618 5.618 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.222 1.222 19 H -0.226 1.226 20 H 0.100 0.900 21 H 0.108 0.892 22 H 0.122 0.878 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.211 0.789 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.362 6.116 -6.750 13.797 hybrid contribution 0.342 0.213 0.554 0.685 sum -10.020 6.329 -6.197 13.374 Atomic orbital electron populations 1.23415 0.92513 1.06841 1.05499 1.87889 1.08891 1.14050 1.97924 1.23464 0.99508 0.91794 1.01757 0.87505 1.21757 1.00609 0.96655 0.95631 1.21488 0.95448 0.94498 1.02779 1.21373 0.96265 0.99754 0.97543 1.22036 1.00189 0.96036 0.98115 1.20201 0.88676 0.92751 0.90796 0.94536 1.42515 1.11724 1.69325 1.12477 1.19571 0.90244 1.28944 0.97224 0.91317 1.25399 1.01848 1.03242 0.96195 1.69827 1.37762 1.50606 1.03628 0.85193 0.80911 0.77073 0.77362 1.19317 1.22220 1.22554 0.89996 0.89245 0.87777 0.93744 0.90482 0.89842 0.91050 0.91225 0.94682 0.93817 0.90224 0.78868 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 10.45 113.37 1.18 -1.51 16 2 S -0.32 -11.45 21.37 -56.49 -1.21 -12.66 16 3 C -0.04 -1.18 2.43 30.59 0.07 -1.11 16 4 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 5 C -0.11 -3.25 4.94 30.60 0.15 -3.10 16 6 C -0.10 -2.68 5.92 30.59 0.18 -2.50 16 7 C -0.11 -3.58 5.77 30.59 0.18 -3.40 16 8 C -0.12 -4.14 5.61 30.61 0.17 -3.97 16 9 C 0.19 7.38 2.54 45.01 0.11 7.50 16 10 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 11 N -0.72 -36.45 3.82 -322.87 -1.23 -37.68 16 12 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 13 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 14 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 15 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 16 Si 0.96 47.85 29.55 68.60 2.03 49.88 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 20 H 0.08 1.77 7.14 -2.39 -0.02 1.76 16 21 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.04 1.72 6.50 -2.39 -0.02 1.70 16 24 H 0.08 1.93 6.92 -2.39 -0.02 1.92 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 1.42 7.61 -2.39 -0.02 1.41 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.38 20.73 6.06 -92.71 -0.56 20.17 16 32 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.33 265.80 3.75 -62.58 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.52 Total: 22.46 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.36 Total: -24.12 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -0.95 Total: -98.14 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Atomic # 16 Polarization: -11.45 SS G_CDS: -1.21 Total: -12.66 kcal Total: -66.33 3.75 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300384945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.137 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds