Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 C 1.50701 * 109.46835 * 119.99573 * 2 1 3 5 5 H 1.08006 * 119.99370 * 120.00166 * 4 2 1 6 6 C 1.37876 * 120.00390 * 299.72784 * 4 2 1 7 7 N 1.31515 * 119.99696 * 0.27175 * 6 4 2 8 8 Si 1.86798 * 120.00123 * 180.27532 * 6 4 2 9 9 H 1.48499 * 109.46914 * 60.00067 * 8 6 4 10 10 H 1.48500 * 109.46936 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 299.99952 * 8 6 4 12 12 N 1.46896 * 109.47012 * 239.99934 * 2 1 3 13 13 C 1.48530 * 111.00285 * 59.56827 * 12 2 1 14 14 C 1.54938 * 103.22474 * 159.71669 * 13 12 2 15 15 C 1.54594 * 102.92422 * 322.58865 * 14 13 12 16 16 O 1.42899 * 110.30624 * 263.03977 * 15 14 13 17 17 C 1.53001 * 110.39172 * 140.91585 * 15 14 13 18 18 O 1.42902 * 109.47096 * 64.23312 * 17 15 14 19 19 C 1.47909 * 110.99670 * 176.96861 * 12 2 1 20 20 H 1.09000 * 109.47493 * 305.36807 * 1 2 3 21 21 H 1.09002 * 109.47324 * 65.37111 * 1 2 3 22 22 H 1.08999 * 109.47002 * 185.36372 * 1 2 3 23 23 H 0.96998 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.08997 * 110.67085 * 278.15383 * 13 12 2 25 25 H 1.09002 * 110.66802 * 41.29026 * 13 12 2 26 26 H 1.09004 * 110.72119 * 204.22839 * 14 13 12 27 27 H 1.09002 * 110.87652 * 81.01664 * 14 13 12 28 28 H 0.96703 * 114.00155 * 295.71281 * 16 15 14 29 29 H 1.09006 * 109.47224 * 184.23103 * 17 15 14 30 30 H 1.08999 * 109.47332 * 304.23647 * 17 15 14 31 31 H 0.96702 * 114.00170 * 179.97438 * 18 17 15 32 32 H 1.09000 * 109.91618 * 333.50385 * 19 12 2 33 33 H 1.08992 * 109.91861 * 94.80218 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.7039 -0.2360 2.4828 7 7 0.9478 0.8333 2.6034 8 14 2.3328 -1.1120 4.0080 9 1 3.8178 -1.1113 4.0022 10 1 1.8427 -0.4085 5.2204 11 1 1.8385 -2.5123 4.0138 12 7 2.0197 -0.6925 -1.1994 13 6 1.5349 -0.0251 -2.4346 14 6 2.5267 -0.5198 -3.5173 15 6 3.8742 -0.5574 -2.7606 16 8 4.6172 0.6373 -3.0111 17 6 4.6866 -1.7846 -3.1791 18 8 5.0272 -1.6810 -4.5630 19 6 3.4964 -0.6493 -1.2706 20 1 -0.3634 0.5948 0.8380 21 1 -0.3634 0.4283 -0.9342 22 1 -0.3633 -1.0232 0.0961 23 1 0.7164 1.1668 3.4843 24 1 0.5189 -0.3421 -2.6698 25 1 1.5868 1.0588 -2.3319 26 1 2.5711 0.1827 -4.3496 27 1 2.2537 -1.5149 -3.8685 28 1 4.8829 0.7489 -3.9342 29 1 5.5980 -1.8373 -2.5835 30 1 4.0941 -2.6850 -3.0172 31 1 5.5444 -2.4264 -4.8977 32 1 3.8683 0.2263 -0.7386 33 1 3.9158 -1.5568 -0.8365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306317542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = -95.547815 kcal Electronic energy + Delta-G solvation = -15294.962138 eV Core-core repulsion = 12741.642713 eV Total energy + Delta-G solvation = -2553.319425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27210 -36.63010 -35.32045 -33.22309 -30.88100 -28.94614 -27.93813 -25.18320 -24.19982 -21.75011 -19.91412 -19.42748 -17.33815 -16.44587 -16.17457 -15.53289 -14.91637 -14.70212 -14.07206 -13.18115 -13.16737 -12.91359 -12.14880 -12.12118 -11.90444 -11.64597 -11.07067 -10.94747 -10.77800 -10.64038 -10.45142 -10.17743 -10.08140 -9.95179 -9.78156 -9.50796 -8.89238 -8.41708 -7.30576 -5.99040 -4.03407 3.33656 3.37750 3.40456 4.15192 4.40752 4.46062 4.95167 5.03646 5.17405 5.31669 5.41951 5.54304 5.69348 5.81786 6.08977 6.25639 6.38708 6.50003 6.52937 6.61214 6.85996 7.04106 7.07286 7.50312 7.51688 7.60156 7.84875 7.97521 8.13671 8.31276 8.55750 9.01959 9.61376 11.08360 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040626 B = 0.008443 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.040131 B = 3315.695842 C = 3697.969881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.203 3.797 3 H 0.002 0.998 4 C -0.504 4.504 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.509 5.509 13 C 0.036 3.964 14 C -0.138 4.138 15 C 0.121 3.879 16 O -0.554 6.554 17 C 0.057 3.943 18 O -0.577 6.577 19 C 0.066 3.934 20 H 0.082 0.918 21 H 0.008 0.992 22 H 0.035 0.965 23 H 0.261 0.739 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.374 0.626 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.378 0.622 32 H 0.061 0.939 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -3.985 -11.185 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.234 5.234 13 C -0.093 4.093 14 C -0.176 4.176 15 C 0.080 3.920 16 O -0.360 6.360 17 C -0.021 4.021 18 O -0.382 6.382 19 C -0.062 4.062 20 H 0.100 0.900 21 H 0.027 0.973 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.222 0.778 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.080 0.920 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.581 -3.749 -10.269 11.853 hybrid contribution 0.965 -0.241 0.261 1.028 sum 5.546 -3.990 -10.008 12.118 Atomic orbital electron populations 1.21793 0.97488 1.00383 0.99100 1.19470 0.92558 0.92094 0.86162 0.98019 1.21054 1.31236 1.12207 0.89759 0.92143 1.24936 0.95221 0.95052 0.99021 1.69896 1.36936 1.22926 1.23523 0.86573 0.79104 0.79702 0.82095 1.20345 1.21348 1.20235 1.64992 1.04342 1.51446 1.02663 1.23131 0.98367 0.96846 0.90921 1.23066 0.95127 1.01759 0.97675 1.22264 0.89887 0.82983 0.96896 1.86566 1.74998 1.42024 1.32372 1.22973 0.98687 0.98807 0.81643 1.86375 1.76645 1.49436 1.25751 1.22524 0.91124 1.02270 0.90322 0.89974 0.97287 0.94559 0.92929 0.90767 0.94379 0.91388 0.90672 0.77841 0.92990 0.92186 0.77517 0.92045 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.86 37.16 0.33 -2.91 16 2 C 0.20 5.30 1.74 -68.86 -0.12 5.18 16 3 H 0.00 0.06 7.99 -51.93 -0.41 -0.35 16 4 C -0.50 -14.06 8.13 -34.44 -0.28 -14.34 16 5 H 0.06 1.67 7.44 -52.48 -0.39 1.28 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 7 N -0.89 -25.92 11.39 55.43 0.63 -25.29 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.51 -11.33 5.10 -223.89 -1.14 -12.48 16 13 C 0.04 0.68 5.39 -1.90 -0.01 0.67 16 14 C -0.14 -2.23 6.15 -24.87 -0.15 -2.38 16 15 C 0.12 2.02 1.17 -89.27 -0.10 1.92 16 16 O -0.55 -9.40 12.94 -45.27 -0.59 -9.98 16 17 C 0.06 0.77 5.85 37.16 0.22 0.98 16 18 O -0.58 -6.67 12.88 -45.27 -0.58 -7.25 16 19 C 0.07 1.35 5.29 -2.75 -0.01 1.34 16 20 H 0.08 2.23 6.24 -51.93 -0.32 1.90 16 21 H 0.01 0.19 6.65 -51.93 -0.35 -0.16 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.07 1.36 7.53 -51.93 -0.39 0.97 16 25 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 26 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 27 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.37 5.02 8.55 45.56 0.39 5.41 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.38 2.58 9.12 45.56 0.42 2.99 16 32 H 0.06 1.42 7.51 -51.93 -0.39 1.03 16 33 H 0.08 1.58 7.54 -51.93 -0.39 1.19 16 LS Contribution 266.28 15.07 4.01 4.01 Total: -1.00 -30.93 266.28 -6.40 -37.34 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.49 Total: 5.07 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.23 Total: -7.98 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.51 Total: -37.76 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.17 Total: -17.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.93 -6.40 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306317542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.212 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds