Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.50696 * 109.47202 * 240.00154 * 2 1 3 5 5 H 1.07997 * 119.99927 * 245.38200 * 4 2 1 6 6 C 1.37873 * 120.00153 * 65.38164 * 4 2 1 7 7 N 1.31515 * 120.00015 * 5.28165 * 6 4 2 8 8 Si 1.86797 * 120.00095 * 185.27693 * 6 4 2 9 9 H 1.48499 * 109.47385 * 95.00060 * 8 6 4 10 10 H 1.48503 * 109.47346 * 215.00148 * 8 6 4 11 11 H 1.48504 * 109.47206 * 334.99903 * 8 6 4 12 12 N 1.46900 * 109.47417 * 119.99767 * 2 1 3 13 13 C 1.46898 * 110.99770 * 58.95562 * 12 2 1 14 14 C 1.46900 * 111.00216 * 295.00503 * 12 2 1 15 15 H 1.09003 * 110.56896 * 73.38058 * 14 12 2 16 16 C 1.54487 * 110.50825 * 310.70641 * 14 12 2 17 17 O 1.44423 * 104.80209 * 217.37562 * 16 14 12 18 18 C 1.44430 * 105.27557 * 40.51150 * 17 16 14 19 19 C 1.54479 * 104.80316 * 319.48901 * 18 17 16 20 20 H 1.09003 * 110.50694 * 265.33070 * 19 18 17 21 21 O 1.42894 * 110.62784 * 142.68184 * 19 18 17 22 22 H 1.09005 * 109.47103 * 174.81535 * 1 2 3 23 23 H 1.09007 * 109.47140 * 294.80890 * 1 2 3 24 24 H 1.08996 * 109.47377 * 54.81387 * 1 2 3 25 25 H 0.97000 * 120.00376 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47302 * 300.88792 * 13 12 2 27 27 H 1.09002 * 109.47311 * 60.88851 * 13 12 2 28 28 H 1.09002 * 109.47485 * 180.88794 * 13 12 2 29 29 H 1.08991 * 110.37066 * 336.20986 * 16 14 12 30 30 H 1.09000 * 110.37020 * 98.54925 * 16 14 12 31 31 H 1.09004 * 110.37018 * 200.65390 * 18 17 16 32 32 H 1.08998 * 110.46421 * 78.36543 * 18 17 16 33 33 H 0.96695 * 114.00378 * 65.28468 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.5796 -1.6363 -1.1337 6 6 1.7932 -0.1782 -2.4796 7 7 1.2189 0.9994 -2.5938 8 14 2.2850 -1.1297 -4.0100 9 1 1.1198 -1.9046 -4.5070 10 1 2.7326 -0.1804 -5.0607 11 1 3.3938 -2.0605 -3.6792 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0392 2.4181 15 1 0.5839 -0.0726 2.6227 16 6 2.0207 1.5328 2.2871 17 8 2.4745 1.9169 3.6033 18 6 3.2642 0.8028 4.0736 19 6 2.4856 -0.4521 3.6204 20 1 1.8345 -0.8068 4.4195 21 8 3.3866 -1.4844 3.2150 22 1 -0.3633 -1.0235 -0.0929 23 1 -0.3634 0.4312 0.9329 24 1 -0.3634 0.5921 -0.8398 25 1 1.0503 1.3738 -3.4726 26 1 0.4384 -2.0747 1.2480 27 1 1.8894 -2.6194 0.3727 28 1 1.8928 -2.5608 2.1517 29 1 2.8199 1.6622 1.5574 30 1 1.1466 2.1179 2.0014 31 1 3.3453 0.8272 5.1604 32 1 4.2549 0.8192 3.6195 33 1 3.9371 -1.8297 3.9310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306442618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -74.559411 kcal Electronic energy + Delta-G solvation = -15634.947180 eV Core-core repulsion = 13082.537881 eV Total energy + Delta-G solvation = -2552.409299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.58198 -36.45751 -35.75945 -32.59581 -29.81747 -28.41636 -28.17548 -25.15804 -24.21854 -22.72346 -20.79937 -18.77175 -17.39165 -16.46493 -15.79566 -15.02275 -15.00769 -14.56756 -14.02209 -13.87440 -12.88154 -12.81204 -12.62406 -12.41305 -11.67681 -11.44449 -11.01672 -10.85039 -10.78452 -10.64677 -10.53764 -10.35908 -10.05836 -9.84669 -9.61421 -9.28804 -8.84905 -8.33803 -7.05271 -6.00271 -4.00270 3.32816 3.39796 3.44237 4.08076 4.45226 4.66987 4.87034 4.94920 5.06875 5.32711 5.37544 5.67404 5.71686 5.90860 5.99984 6.22565 6.31401 6.44087 6.50856 6.67045 6.78351 6.96028 6.98660 7.08214 7.47730 7.64273 7.83504 7.95407 8.15872 8.39891 8.65351 9.05741 9.63537 11.09599 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.042143 B = 0.009218 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.239159 B = 3036.717183 C = 3275.990239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.201 3.799 3 H 0.049 0.951 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.505 5.505 13 C 0.040 3.960 14 C 0.057 3.943 15 H 0.050 0.950 16 C 0.052 3.948 17 O -0.380 6.380 18 C 0.018 3.982 19 C 0.078 3.922 20 H 0.059 0.941 21 O -0.524 6.524 22 H 0.033 0.967 23 H 0.009 0.991 24 H 0.072 0.928 25 H 0.260 0.740 26 H 0.008 0.992 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -2.426 11.355 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.229 5.229 13 C -0.108 4.108 14 C -0.053 4.053 15 H 0.068 0.932 16 C -0.024 4.024 17 O -0.298 6.298 18 C -0.060 4.060 19 C 0.018 3.982 20 H 0.077 0.923 21 O -0.326 6.326 22 H 0.053 0.947 23 H 0.028 0.972 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.602 -1.985 10.710 11.010 hybrid contribution -0.523 -0.674 -0.427 0.954 sum 1.079 -2.659 10.283 10.676 Atomic orbital electron populations 1.22381 1.01387 0.99929 0.99010 1.19474 0.89255 0.95371 0.86427 0.93365 1.21100 1.34533 1.08269 0.89691 0.91870 1.24926 0.95495 0.94850 0.98983 1.69939 1.43781 1.16120 1.23596 0.86539 0.78662 0.79765 0.82793 1.20938 1.21344 1.19813 1.62325 1.58729 1.01639 1.00247 1.22225 0.96000 0.90848 1.01725 1.22914 0.96109 0.94130 0.92192 0.93190 1.23643 1.00524 0.93659 0.84599 1.89073 1.69247 1.38927 1.32572 1.24108 0.95906 0.86559 0.99380 1.23197 0.91146 0.87797 0.96105 0.92347 1.86911 1.54384 1.53767 1.37555 0.94743 0.97239 0.90919 0.93067 0.97319 0.91216 0.92514 0.90135 0.89044 0.89771 0.91283 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.24 37.16 0.31 -3.70 16 2 C 0.20 5.03 1.86 -68.87 -0.13 4.90 16 3 H 0.05 1.31 6.11 -51.93 -0.32 0.99 16 4 C -0.50 -13.72 7.99 -34.44 -0.28 -14.00 16 5 H 0.06 1.77 6.55 -52.49 -0.34 1.42 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 7 N -0.90 -25.67 11.99 55.43 0.66 -25.00 16 8 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.50 -11.03 4.02 -226.41 -0.91 -11.94 16 13 C 0.04 0.82 8.45 60.06 0.51 1.33 16 14 C 0.06 1.06 2.18 -66.14 -0.14 0.91 16 15 H 0.05 0.94 7.06 -51.93 -0.37 0.57 16 16 C 0.05 0.97 5.92 37.94 0.22 1.20 16 17 O -0.38 -6.57 11.65 -35.23 -0.41 -6.98 16 18 C 0.02 0.26 7.38 37.93 0.28 0.54 16 19 C 0.08 1.17 4.22 -25.16 -0.11 1.07 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 O -0.52 -7.91 10.38 -35.23 -0.37 -8.27 16 22 H 0.03 0.81 6.66 -51.93 -0.35 0.46 16 23 H 0.01 0.19 6.61 -51.93 -0.34 -0.15 16 24 H 0.07 1.90 6.85 -51.93 -0.36 1.54 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.01 0.17 6.35 -51.93 -0.33 -0.16 16 27 H 0.07 1.52 6.46 -51.93 -0.34 1.19 16 28 H 0.06 1.04 6.07 -51.93 -0.32 0.73 16 29 H 0.08 1.66 7.06 -51.93 -0.37 1.30 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.36 3.49 9.12 45.56 0.42 3.90 16 LS Contribution 256.17 15.07 3.86 3.86 Total: -1.00 -30.32 256.17 -5.44 -35.76 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.83 Total: 2.24 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 0.57 Total: -6.22 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.25 Total: -36.94 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.78 Total: -15.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.32 -5.44 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.800 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds