Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.50696 * 109.47202 * 240.00154 * 2 1 3 5 5 H 1.07997 * 119.99927 * 245.38200 * 4 2 1 6 6 C 1.37873 * 120.00153 * 65.38164 * 4 2 1 7 7 N 1.31515 * 120.00015 * 5.28165 * 6 4 2 8 8 Si 1.86797 * 120.00095 * 185.27693 * 6 4 2 9 9 H 1.48499 * 109.47385 * 95.00060 * 8 6 4 10 10 H 1.48503 * 109.47346 * 215.00148 * 8 6 4 11 11 H 1.48504 * 109.47206 * 334.99903 * 8 6 4 12 12 N 1.46900 * 109.47417 * 119.99767 * 2 1 3 13 13 C 1.46898 * 110.99770 * 58.95562 * 12 2 1 14 14 C 1.46900 * 111.00216 * 295.00503 * 12 2 1 15 15 H 1.09003 * 110.56896 * 73.38058 * 14 12 2 16 16 C 1.54487 * 110.50825 * 310.70641 * 14 12 2 17 17 O 1.44423 * 104.80209 * 217.37562 * 16 14 12 18 18 C 1.44430 * 105.27557 * 40.51150 * 17 16 14 19 19 C 1.54479 * 104.80316 * 319.48901 * 18 17 16 20 20 H 1.09003 * 110.50694 * 265.33070 * 19 18 17 21 21 O 1.42894 * 110.62784 * 142.68184 * 19 18 17 22 22 H 1.09005 * 109.47103 * 174.81535 * 1 2 3 23 23 H 1.09007 * 109.47140 * 294.80890 * 1 2 3 24 24 H 1.08996 * 109.47377 * 54.81387 * 1 2 3 25 25 H 0.97000 * 120.00376 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47302 * 300.88792 * 13 12 2 27 27 H 1.09002 * 109.47311 * 60.88851 * 13 12 2 28 28 H 1.09002 * 109.47485 * 180.88794 * 13 12 2 29 29 H 1.08991 * 110.37066 * 336.20986 * 16 14 12 30 30 H 1.09000 * 110.37020 * 98.54925 * 16 14 12 31 31 H 1.09004 * 110.37018 * 200.65390 * 18 17 16 32 32 H 1.08998 * 110.46421 * 78.36543 * 18 17 16 33 33 H 0.96695 * 114.00378 * 65.28468 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.5796 -1.6363 -1.1337 6 6 1.7932 -0.1782 -2.4796 7 7 1.2189 0.9994 -2.5938 8 14 2.2850 -1.1297 -4.0100 9 1 1.1198 -1.9046 -4.5070 10 1 2.7326 -0.1804 -5.0607 11 1 3.3938 -2.0605 -3.6792 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0392 2.4181 15 1 0.5839 -0.0726 2.6227 16 6 2.0207 1.5328 2.2871 17 8 2.4745 1.9169 3.6033 18 6 3.2642 0.8028 4.0736 19 6 2.4856 -0.4521 3.6204 20 1 1.8345 -0.8068 4.4195 21 8 3.3866 -1.4844 3.2150 22 1 -0.3633 -1.0235 -0.0929 23 1 -0.3634 0.4312 0.9329 24 1 -0.3634 0.5921 -0.8398 25 1 1.0503 1.3738 -3.4726 26 1 0.4384 -2.0747 1.2480 27 1 1.8894 -2.6194 0.3727 28 1 1.8928 -2.5608 2.1517 29 1 2.8199 1.6622 1.5574 30 1 1.1466 2.1179 2.0014 31 1 3.3453 0.8272 5.1604 32 1 4.2549 0.8192 3.6195 33 1 3.9371 -1.8297 3.9310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306442618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -98.867687 kcal Electronic energy + Delta-G solvation = -15636.001266 eV Core-core repulsion = 13082.537881 eV Total energy + Delta-G solvation = -2553.463385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96402 -38.12921 -36.97218 -34.60500 -31.42683 -30.14007 -29.47930 -27.23592 -25.91056 -24.12838 -22.34416 -20.40630 -18.67026 -18.30540 -17.33472 -16.79610 -16.42284 -16.05286 -15.58244 -15.47882 -14.55663 -14.47281 -14.14556 -13.85072 -13.51223 -12.95766 -12.79144 -12.69928 -12.62491 -12.32299 -12.20132 -12.05160 -11.94921 -11.28303 -11.05234 -10.84423 -10.62428 -10.43931 -8.76142 -8.12276 -6.18864 1.41360 1.42545 1.53434 2.43300 2.82103 3.19016 3.42756 3.49908 3.63929 3.80595 4.14681 4.26366 4.41596 4.67009 4.67675 4.75802 4.79690 4.85371 4.85700 4.87812 4.97848 5.12122 5.29085 5.50236 5.63533 5.75235 5.77841 6.18916 6.53224 6.75768 6.95020 7.12334 7.49109 8.96832 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.042143 B = 0.009218 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.239159 B = 3036.717183 C = 3275.990239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.206 3.794 3 H 0.020 0.980 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.515 5.515 13 C 0.048 3.952 14 C 0.047 3.953 15 H 0.053 0.947 16 C 0.059 3.941 17 O -0.388 6.388 18 C 0.017 3.983 19 C 0.088 3.912 20 H 0.090 0.910 21 O -0.546 6.546 22 H 0.033 0.967 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.261 0.739 26 H 0.008 0.992 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -3.456 12.796 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.098 3.902 3 H 0.038 0.962 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.239 5.239 13 C -0.100 4.100 14 C -0.063 4.063 15 H 0.071 0.929 16 C -0.018 4.018 17 O -0.306 6.306 18 C -0.060 4.060 19 C 0.028 3.972 20 H 0.108 0.892 21 O -0.353 6.353 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.894 -3.032 12.185 12.698 hybrid contribution -0.560 -0.353 -0.788 1.029 sum 1.334 -3.385 11.397 11.964 Atomic orbital electron populations 1.22171 1.00713 0.99397 0.98919 1.19224 0.89597 0.93938 0.87403 0.96195 1.21378 1.34523 1.08114 0.91126 0.92738 1.25668 0.95596 0.95647 1.01789 1.70053 1.44648 1.17298 1.24191 0.85577 0.78469 0.78516 0.79277 1.20249 1.21023 1.19465 1.62203 1.59068 1.02269 1.00389 1.22170 0.95901 0.89993 1.01957 1.23071 0.97173 0.93810 0.92217 0.92936 1.23400 0.99353 0.94155 0.84933 1.89064 1.69729 1.40419 1.31411 1.24337 0.94924 0.85116 1.01641 1.23121 0.91243 0.88247 0.94616 0.89202 1.86822 1.54990 1.53733 1.39713 0.94809 0.95122 0.93594 0.93039 0.97315 0.93298 0.90006 0.93033 0.89466 0.85683 0.91938 0.76466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.35 8.24 71.98 0.59 -6.75 16 2 C 0.21 10.46 1.86 44.17 0.08 10.54 16 3 H 0.02 1.13 6.11 -2.39 -0.01 1.12 16 4 C -0.51 -28.71 7.99 25.60 0.20 -28.50 16 5 H 0.05 3.08 6.55 -2.91 -0.02 3.06 16 6 C 0.01 0.64 5.29 84.65 0.45 1.09 16 7 N -0.92 -53.82 11.99 21.45 0.26 -53.56 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.51 -22.26 4.02 -870.24 -3.50 -25.76 16 13 C 0.05 1.90 8.45 127.69 1.08 2.98 16 14 C 0.05 1.69 2.18 45.93 0.10 1.79 16 15 H 0.05 1.86 7.06 -2.39 -0.02 1.85 16 16 C 0.06 2.18 5.92 72.49 0.43 2.61 16 17 O -0.39 -12.78 11.65 -148.98 -1.74 -14.52 16 18 C 0.02 0.42 7.38 72.48 0.54 0.96 16 19 C 0.09 2.36 4.22 31.61 0.13 2.49 16 20 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 21 O -0.55 -14.80 10.38 -148.98 -1.55 -16.35 16 22 H 0.03 1.58 6.66 -2.38 -0.02 1.56 16 23 H 0.03 1.30 6.61 -2.38 -0.02 1.28 16 24 H 0.05 2.43 6.85 -2.39 -0.02 2.42 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.01 0.33 6.35 -2.39 -0.02 0.32 16 27 H 0.05 2.12 6.46 -2.39 -0.02 2.10 16 28 H 0.08 2.81 6.07 -2.39 -0.01 2.80 16 29 H 0.05 2.21 7.06 -2.39 -0.02 2.19 16 30 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 33 H 0.39 6.01 9.12 -74.06 -0.68 5.34 16 Total: -1.00 -65.07 256.17 -0.46 -65.53 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.44 Total: 10.90 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 3.60 Total: -12.80 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -3.24 Total: -79.32 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -3.28 Total: -30.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.07 -0.46 -65.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.336 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds