Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46974 * 2 1 4 4 C 1.50695 * 109.47290 * 240.00392 * 2 1 3 5 5 H 1.08005 * 119.99726 * 240.00011 * 4 2 1 6 6 C 1.37874 * 120.00467 * 59.99322 * 4 2 1 7 7 N 1.31522 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00262 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46990 * 60.00346 * 8 6 4 10 10 H 1.48503 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47442 * 300.00088 * 8 6 4 12 12 N 1.46894 * 109.47253 * 119.99589 * 2 1 3 13 13 C 1.46903 * 111.00130 * 187.74308 * 12 2 1 14 14 C 1.46895 * 111.00108 * 311.70449 * 12 2 1 15 15 H 1.08990 * 110.46153 * 60.66134 * 14 12 2 16 16 C 1.54487 * 110.62808 * 183.34900 * 14 12 2 17 17 O 1.44424 * 104.80621 * 142.67605 * 16 14 12 18 18 C 1.44426 * 105.27601 * 319.48792 * 17 16 14 19 19 C 1.54487 * 104.80081 * 40.51279 * 18 17 16 20 20 H 1.08997 * 110.51220 * 94.80568 * 19 18 17 21 21 O 1.42903 * 110.50545 * 217.37597 * 19 18 17 22 22 H 1.09002 * 109.46966 * 66.14144 * 1 2 3 23 23 H 1.08998 * 109.46908 * 186.14387 * 1 2 3 24 24 H 1.08997 * 109.47123 * 306.14577 * 1 2 3 25 25 H 0.96999 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47023 * 194.96511 * 13 12 2 27 27 H 1.08995 * 109.47157 * 314.96590 * 13 12 2 28 28 H 1.08998 * 109.46741 * 74.96869 * 13 12 2 29 29 H 1.09004 * 110.37235 * 23.84149 * 16 14 12 30 30 H 1.08993 * 110.36841 * 261.51142 * 16 14 12 31 31 H 1.08996 * 110.37368 * 159.33931 * 18 17 16 32 32 H 1.09004 * 110.37265 * 281.68280 * 18 17 16 33 33 H 0.96692 * 114.00457 * 298.54589 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 3.4764 -0.5540 1.3294 14 6 1.3350 -0.2058 2.4045 15 1 0.2627 -0.3871 2.3329 16 6 1.9144 -0.8786 3.6688 17 8 1.9115 0.1590 4.6733 18 6 2.3332 1.3564 3.9848 19 6 1.6168 1.2984 2.6173 20 1 0.6849 1.8628 2.6500 21 8 2.4680 1.7993 1.5845 22 1 -0.3633 0.4157 -0.9399 23 1 -0.3633 -1.0218 0.1100 24 1 -0.3633 0.6061 0.8298 25 1 0.7094 1.1618 -3.4844 26 1 3.8469 -1.2787 2.0543 27 1 3.9462 -0.7345 0.3625 28 1 3.7168 0.4538 1.6677 29 1 2.9315 -1.2238 3.4826 30 1 1.2818 -1.7099 3.9799 31 1 2.0221 2.2421 4.5387 32 1 3.4145 1.3541 3.8471 33 1 2.7258 2.7239 1.7012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306442619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -62.050301 kcal Electronic energy + Delta-G solvation = -15873.644846 eV Core-core repulsion = 13321.777982 eV Total energy + Delta-G solvation = -2551.866864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92763 -36.45179 -35.21935 -32.67627 -29.64628 -29.01694 -28.01243 -25.13894 -24.12042 -22.20450 -20.90350 -18.78752 -17.58821 -16.19266 -16.02625 -15.39608 -14.91988 -14.78000 -13.89992 -13.80048 -13.22127 -12.81702 -12.38329 -11.78215 -11.54360 -11.44800 -11.11531 -10.91488 -10.78884 -10.62723 -10.55472 -10.19762 -9.97493 -9.80676 -9.38086 -9.24508 -8.74447 -8.27567 -6.89455 -5.89621 -3.91902 3.37434 3.41262 3.44742 4.00017 4.48712 4.64022 4.86290 5.03722 5.22899 5.27996 5.42581 5.54721 5.67301 5.82339 5.97278 6.04910 6.32500 6.40260 6.70780 6.87275 6.91207 7.01458 7.15056 7.27873 7.74460 7.80512 7.96348 8.05263 8.39803 8.48250 8.74292 9.16071 9.70719 11.16407 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.053528 B = 0.009107 C = 0.008829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.960321 B = 3073.757711 C = 3170.503697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.204 3.796 3 H 0.049 0.951 4 C -0.494 4.494 5 H 0.057 0.943 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.517 5.517 13 C 0.019 3.981 14 C 0.059 3.941 15 H 0.097 0.903 16 C 0.042 3.958 17 O -0.379 6.379 18 C 0.015 3.985 19 C 0.038 3.962 20 H 0.063 0.937 21 O -0.517 6.517 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.003 0.997 25 H 0.258 0.742 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 1.911 10.057 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.099 3.901 3 H 0.066 0.934 4 C -0.533 4.533 5 H 0.075 0.925 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.241 5.241 13 C -0.129 4.129 14 C -0.052 4.052 15 H 0.115 0.885 16 C -0.035 4.035 17 O -0.297 6.297 18 C -0.062 4.062 19 C -0.024 4.024 20 H 0.081 0.919 21 O -0.322 6.322 22 H 0.105 0.895 23 H 0.046 0.954 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.702 0.884 9.838 10.023 hybrid contribution 0.479 0.986 -0.750 1.328 sum 2.181 1.870 9.088 9.531 Atomic orbital electron populations 1.21933 0.98895 0.98032 1.00764 1.19561 0.91240 0.94510 0.84806 0.93411 1.21162 1.30253 1.11808 0.90039 0.92480 1.24892 0.95557 0.95215 0.98771 1.69885 1.37415 1.23187 1.23119 0.86641 0.79028 0.79739 0.82404 1.20430 1.21512 1.20493 1.62241 1.03924 1.56576 1.01345 1.22582 0.89548 0.99401 1.01331 1.23264 1.00672 0.88727 0.92490 0.88497 1.23723 1.01850 0.90984 0.86903 1.89074 1.88914 1.18870 1.32845 1.24191 0.99228 0.89063 0.93749 1.24017 0.93028 0.98607 0.86717 0.91913 1.87158 1.68284 1.30179 1.46616 0.89506 0.95441 0.97800 0.93218 0.94801 0.91228 0.93209 0.91025 0.88959 0.89657 0.91783 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.16 37.16 0.30 -3.12 16 2 C 0.20 5.15 1.57 -68.87 -0.11 5.04 16 3 H 0.05 1.31 5.29 -51.93 -0.27 1.04 16 4 C -0.49 -13.80 7.77 -34.44 -0.27 -14.07 16 5 H 0.06 1.61 7.36 -52.48 -0.39 1.23 16 6 C 0.06 1.56 5.29 -17.82 -0.09 1.47 16 7 N -0.90 -25.84 11.29 55.43 0.63 -25.21 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 N -0.52 -11.22 4.69 -226.43 -1.06 -12.29 16 13 C 0.02 0.39 8.46 60.07 0.51 0.90 16 14 C 0.06 1.09 2.62 -66.14 -0.17 0.92 16 15 H 0.10 1.83 6.44 -51.93 -0.33 1.50 16 16 C 0.04 0.67 7.11 37.94 0.27 0.94 16 17 O -0.38 -6.01 11.65 -35.23 -0.41 -6.42 16 18 C 0.02 0.21 7.31 37.94 0.28 0.49 16 19 C 0.04 0.62 3.62 -25.16 -0.09 0.53 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 21 O -0.52 -9.01 6.73 -35.23 -0.24 -9.24 16 22 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.00 0.07 6.48 -51.93 -0.34 -0.27 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.60 6.31 -51.93 -0.33 0.27 16 27 H 0.07 1.54 6.73 -51.93 -0.35 1.19 16 28 H 0.05 0.96 4.90 -51.93 -0.25 0.70 16 29 H 0.07 1.15 5.54 -51.93 -0.29 0.86 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.36 4.55 9.11 45.56 0.42 4.96 16 LS Contribution 250.09 15.07 3.77 3.77 Total: -1.00 -30.34 250.09 -5.40 -35.74 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.68 Total: 3.84 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.62 Total: -6.92 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.44 Total: -37.50 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.65 Total: -15.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.34 -5.40 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.309 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds