Wall clock time and date at job start Mon Mar 30 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46974 * 2 1 4 4 C 1.50695 * 109.47290 * 240.00392 * 2 1 3 5 5 H 1.08005 * 119.99726 * 240.00011 * 4 2 1 6 6 C 1.37874 * 120.00467 * 59.99322 * 4 2 1 7 7 N 1.31522 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00262 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46990 * 60.00346 * 8 6 4 10 10 H 1.48503 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47442 * 300.00088 * 8 6 4 12 12 N 1.46894 * 109.47253 * 119.99589 * 2 1 3 13 13 C 1.46903 * 111.00130 * 187.74308 * 12 2 1 14 14 C 1.46895 * 111.00108 * 311.70449 * 12 2 1 15 15 H 1.08990 * 110.46153 * 60.66134 * 14 12 2 16 16 C 1.54487 * 110.62808 * 183.34900 * 14 12 2 17 17 O 1.44424 * 104.80621 * 142.67605 * 16 14 12 18 18 C 1.44426 * 105.27601 * 319.48792 * 17 16 14 19 19 C 1.54487 * 104.80081 * 40.51279 * 18 17 16 20 20 H 1.08997 * 110.51220 * 94.80568 * 19 18 17 21 21 O 1.42903 * 110.50545 * 217.37597 * 19 18 17 22 22 H 1.09002 * 109.46966 * 66.14144 * 1 2 3 23 23 H 1.08998 * 109.46908 * 186.14387 * 1 2 3 24 24 H 1.08997 * 109.47123 * 306.14577 * 1 2 3 25 25 H 0.96999 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47023 * 194.96511 * 13 12 2 27 27 H 1.08995 * 109.47157 * 314.96590 * 13 12 2 28 28 H 1.08998 * 109.46741 * 74.96869 * 13 12 2 29 29 H 1.09004 * 110.37235 * 23.84149 * 16 14 12 30 30 H 1.08993 * 110.36841 * 261.51142 * 16 14 12 31 31 H 1.08996 * 110.37368 * 159.33931 * 18 17 16 32 32 H 1.09004 * 110.37265 * 281.68280 * 18 17 16 33 33 H 0.96692 * 114.00457 * 298.54589 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 3.4764 -0.5540 1.3294 14 6 1.3350 -0.2058 2.4045 15 1 0.2627 -0.3871 2.3329 16 6 1.9144 -0.8786 3.6688 17 8 1.9115 0.1590 4.6733 18 6 2.3332 1.3564 3.9848 19 6 1.6168 1.2984 2.6173 20 1 0.6849 1.8628 2.6500 21 8 2.4680 1.7993 1.5845 22 1 -0.3633 0.4157 -0.9399 23 1 -0.3633 -1.0218 0.1100 24 1 -0.3633 0.6061 0.8298 25 1 0.7094 1.1618 -3.4844 26 1 3.8469 -1.2787 2.0543 27 1 3.9462 -0.7345 0.3625 28 1 3.7168 0.4538 1.6677 29 1 2.9315 -1.2238 3.4826 30 1 1.2818 -1.7099 3.9799 31 1 2.0221 2.2421 4.5387 32 1 3.4145 1.3541 3.8471 33 1 2.7258 2.7239 1.7012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306442619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:19 Heat of formation + Delta-G solvation = -86.241972 kcal Electronic energy + Delta-G solvation = -15874.693875 eV Core-core repulsion = 13321.777982 eV Total energy + Delta-G solvation = -2552.915893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.27949 -37.91902 -36.71380 -34.64836 -31.40251 -30.57207 -29.29993 -27.14281 -25.80304 -23.48430 -22.62631 -20.38838 -18.98818 -18.06565 -17.41990 -16.98056 -16.42196 -16.22317 -15.54677 -15.44922 -14.82389 -14.29022 -13.95917 -13.46406 -13.14695 -12.97060 -12.86103 -12.65607 -12.50087 -12.38344 -12.10201 -12.07175 -11.82953 -11.54153 -10.94770 -10.73089 -10.52837 -10.31248 -8.58853 -8.01873 -6.11129 1.42793 1.44294 1.51637 2.46133 2.78608 3.24009 3.36459 3.57575 3.75703 3.92029 4.03649 4.26804 4.34203 4.69799 4.72052 4.79253 4.83348 4.93032 4.99887 5.08997 5.19596 5.28422 5.44920 5.62733 5.70161 5.89286 6.02624 6.41127 6.56987 6.80861 6.93941 7.08377 7.55490 9.02017 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.053528 B = 0.009107 C = 0.008829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.960321 B = 3073.757711 C = 3170.503697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.210 3.790 3 H 0.030 0.970 4 C -0.511 4.511 5 H 0.046 0.954 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.025 3.975 14 C 0.048 3.952 15 H 0.087 0.913 16 C 0.051 3.949 17 O -0.385 6.385 18 C 0.023 3.977 19 C 0.040 3.960 20 H 0.066 0.934 21 O -0.542 6.542 22 H 0.058 0.942 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.258 0.742 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 1.949 11.119 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.047 0.953 4 C -0.550 4.550 5 H 0.064 0.936 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.122 4.122 14 C -0.062 4.062 15 H 0.105 0.895 16 C -0.025 4.025 17 O -0.303 6.303 18 C -0.054 4.054 19 C -0.021 4.021 20 H 0.084 0.916 21 O -0.350 6.350 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.205 0.930 10.922 11.182 hybrid contribution 0.325 1.012 -1.025 1.477 sum 2.530 1.943 9.897 10.398 Atomic orbital electron populations 1.21747 0.98903 0.97728 1.00014 1.19300 0.91108 0.93564 0.85665 0.95283 1.21462 1.30232 1.11668 0.91663 0.93618 1.25602 0.95803 0.95942 1.01457 1.70007 1.38168 1.24217 1.23609 0.85704 0.78640 0.78639 0.79131 1.20174 1.20979 1.19948 1.62106 1.04887 1.56683 1.01590 1.22527 0.88568 1.00777 1.00362 1.23331 0.99961 0.90853 0.92094 0.89505 1.23630 1.01938 0.91238 0.85722 1.89079 1.89035 1.19381 1.32834 1.24234 0.99358 0.89413 0.92367 1.23922 0.93516 0.96990 0.87707 0.91607 1.87039 1.68462 1.31994 1.47543 0.92283 0.95988 0.95770 0.93273 0.92467 0.94098 0.92199 0.90945 0.87560 0.86765 0.91083 0.77341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.16 71.98 0.59 -5.69 16 2 C 0.21 10.66 1.57 44.17 0.07 10.73 16 3 H 0.03 1.63 5.29 -2.39 -0.01 1.62 16 4 C -0.51 -28.92 7.77 25.60 0.20 -28.72 16 5 H 0.05 2.62 7.36 -2.91 -0.02 2.60 16 6 C 0.01 0.54 5.29 84.65 0.45 0.99 16 7 N -0.92 -53.56 11.29 21.45 0.24 -53.31 16 8 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.53 -22.65 4.69 -870.29 -4.09 -26.73 16 13 C 0.03 0.99 8.46 127.69 1.08 2.07 16 14 C 0.05 1.69 2.62 45.94 0.12 1.81 16 15 H 0.09 3.19 6.44 -2.39 -0.02 3.18 16 16 C 0.05 1.51 7.11 72.49 0.52 2.02 16 17 O -0.38 -11.03 11.65 -148.98 -1.74 -12.76 16 18 C 0.02 0.57 7.31 72.49 0.53 1.10 16 19 C 0.04 1.21 3.62 31.61 0.11 1.33 16 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 21 O -0.54 -18.18 6.73 -148.98 -1.00 -19.18 16 22 H 0.06 3.28 5.93 -2.39 -0.01 3.26 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.02 1.05 6.48 -2.39 -0.02 1.04 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.06 1.94 6.31 -2.39 -0.02 1.93 16 27 H 0.04 1.81 6.73 -2.39 -0.02 1.79 16 28 H 0.06 2.22 4.90 -2.39 -0.01 2.21 16 29 H 0.07 2.13 5.54 -2.39 -0.01 2.11 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 1.68 8.00 -2.39 -0.02 1.66 16 33 H 0.38 8.99 9.11 -74.06 -0.67 8.32 16 Total: -1.00 -64.09 250.09 -0.45 -64.53 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.44 Total: 14.95 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.66 Total: -14.35 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.84 Total: -80.05 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -2.74 Total: -31.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.09 -0.45 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.708 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds