Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47283 * 2 1 4 4 C 1.50694 * 109.46914 * 239.99750 * 2 1 3 5 5 H 1.08001 * 119.99983 * 245.22810 * 4 2 1 6 6 C 1.37883 * 120.00216 * 65.23503 * 4 2 1 7 7 N 1.31515 * 119.99618 * 11.85140 * 6 4 2 8 8 Si 1.86799 * 120.00132 * 191.85264 * 6 4 2 9 9 H 1.48495 * 109.47020 * 94.95226 * 8 6 4 10 10 H 1.48505 * 109.46890 * 214.95258 * 8 6 4 11 11 H 1.48504 * 109.46811 * 334.94895 * 8 6 4 12 12 N 1.46901 * 109.46986 * 119.99737 * 2 1 3 13 13 C 1.46893 * 110.99992 * 176.04483 * 12 2 1 14 14 C 1.46897 * 111.00169 * 299.99906 * 12 2 1 15 15 H 1.09004 * 110.56679 * 56.37480 * 14 12 2 16 16 C 1.54472 * 110.51465 * 293.69563 * 14 12 2 17 17 O 1.44428 * 104.90458 * 217.43379 * 16 14 12 18 18 C 1.44425 * 105.27495 * 40.45040 * 17 16 14 19 19 C 1.54482 * 104.80106 * 319.49444 * 18 17 16 20 20 H 1.09004 * 110.50941 * 142.76489 * 19 18 17 21 21 O 1.42900 * 110.51132 * 265.32901 * 19 18 17 22 22 H 1.08999 * 109.47384 * 187.25175 * 1 2 3 23 23 H 1.09001 * 109.47061 * 307.24993 * 1 2 3 24 24 H 1.09001 * 109.46754 * 67.24934 * 1 2 3 25 25 H 0.96999 * 119.99612 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47237 * 178.17589 * 13 12 2 27 27 H 1.09002 * 109.47283 * 298.17607 * 13 12 2 28 28 H 1.09004 * 109.47262 * 58.17364 * 13 12 2 29 29 H 1.09000 * 110.37689 * 98.53894 * 16 14 12 30 30 H 1.09004 * 110.36970 * 336.31924 * 16 14 12 31 31 H 1.08998 * 110.37311 * 78.32037 * 18 17 16 32 32 H 1.08996 * 110.37614 * 200.66287 * 18 17 16 33 33 H 0.96705 * 114.00293 * 298.55363 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5818 -1.6352 -1.1335 6 6 1.7905 -0.1799 -2.4799 7 7 1.3336 1.0479 -2.5957 8 14 2.1119 -1.2049 -4.0081 9 1 0.8526 -1.8667 -4.4340 10 1 2.6028 -0.3257 -5.0996 11 1 3.1358 -2.2371 -3.7054 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7945 1.1871 14 6 1.5487 -0.0263 2.4211 15 1 0.4607 0.0405 2.4257 16 6 2.1777 1.3788 2.5483 17 8 2.4320 1.5455 3.9602 18 6 2.9249 0.2652 4.4118 19 6 2.0504 -0.7755 3.6779 20 1 2.6463 -1.6429 3.3938 21 8 0.9500 -1.1728 4.4986 22 1 -0.3634 -1.0194 0.1297 23 1 -0.3633 0.6220 0.8180 24 1 -0.3633 0.3974 -0.9477 25 1 1.1631 1.4210 -3.4746 26 1 3.8230 -1.2823 2.1014 27 1 3.8011 -1.3808 0.3243 28 1 3.9183 0.2039 1.1264 29 1 1.4814 2.1397 2.1957 30 1 3.1102 1.4294 1.9862 31 1 3.9722 0.1430 4.1357 32 1 2.8025 0.1705 5.4907 33 1 1.2107 -1.5948 5.3287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306442620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = -103.497737 kcal Electronic energy + Delta-G solvation = -15530.204109 eV Core-core repulsion = 12976.539950 eV Total energy + Delta-G solvation = -2553.664159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.22799 -38.00284 -36.99788 -34.78296 -31.72372 -30.25427 -29.57456 -27.16453 -25.91291 -24.23264 -22.42942 -20.51910 -18.45894 -18.41182 -17.42413 -17.34897 -16.66231 -16.36939 -15.49562 -15.13195 -14.71787 -14.40979 -14.08795 -13.81757 -13.52053 -13.09418 -12.95233 -12.87771 -12.70046 -12.53794 -12.15057 -12.05602 -11.98243 -11.45814 -11.15101 -10.93530 -10.66737 -10.52239 -8.94809 -8.16117 -6.22187 1.41947 1.44684 1.53873 2.41406 2.78814 3.09365 3.15729 3.54122 3.56976 3.89036 4.00026 4.07210 4.40024 4.52603 4.57887 4.61690 4.72274 4.74055 4.82296 4.95427 5.00589 5.04268 5.24587 5.41282 5.60695 5.69448 5.72087 6.15353 6.30073 6.65858 6.91150 6.93718 7.45134 8.93128 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050669 B = 0.008216 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.471841 B = 3407.145444 C = 3453.823049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.215 3.785 3 H -0.020 1.020 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.528 5.528 13 C 0.030 3.970 14 C 0.054 3.946 15 H 0.084 0.916 16 C 0.020 3.980 17 O -0.389 6.389 18 C 0.013 3.987 19 C 0.083 3.917 20 H 0.093 0.907 21 O -0.572 6.572 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.042 0.958 25 H 0.262 0.738 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.015 0.985 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -3.756 11.910 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.002 1.002 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.253 5.253 13 C -0.117 4.117 14 C -0.056 4.056 15 H 0.102 0.898 16 C -0.059 4.059 17 O -0.307 6.307 18 C -0.064 4.064 19 C 0.023 3.977 20 H 0.110 0.890 21 O -0.381 6.381 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.241 -3.663 11.419 12.423 hybrid contribution 0.564 0.356 -0.862 1.090 sum 3.805 -3.306 10.558 11.699 Atomic orbital electron populations 1.21617 0.97884 0.98961 0.99064 1.19081 0.92057 0.91240 0.86819 1.00221 1.21356 1.35553 1.08164 0.90826 0.92004 1.25688 0.95338 0.95491 1.01907 1.70102 1.46779 1.14548 1.24436 0.85584 0.78436 0.78806 0.79054 1.20397 1.21200 1.18982 1.62230 1.10728 1.51230 1.01106 1.22363 0.87508 0.99502 1.02370 1.23010 1.00896 0.90976 0.90698 0.89832 1.24036 1.00258 0.98797 0.82809 1.89070 1.85993 1.33165 1.22509 1.24423 0.98016 0.82483 1.01475 1.23166 0.87762 0.97126 0.89598 0.88974 1.86521 1.33652 1.81766 1.36127 0.94180 0.95445 0.93866 0.92920 0.90024 0.91685 0.96704 0.90264 0.91958 0.90110 0.85942 0.75131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.67 71.98 0.62 -5.11 16 2 C 0.21 10.76 1.73 44.17 0.08 10.84 16 3 H -0.02 -1.10 7.27 -2.39 -0.02 -1.12 16 4 C -0.52 -28.13 7.74 25.60 0.20 -27.93 16 5 H 0.06 3.30 6.64 -2.91 -0.02 3.28 16 6 C 0.02 0.82 5.09 84.66 0.43 1.25 16 7 N -0.92 -52.99 12.28 21.45 0.26 -52.72 16 8 Si 0.96 43.26 29.55 68.60 2.03 45.29 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 N -0.53 -22.02 4.64 -869.94 -4.04 -26.06 16 13 C 0.03 1.11 8.49 127.69 1.08 2.19 16 14 C 0.05 1.99 2.73 45.99 0.13 2.12 16 15 H 0.08 3.42 6.22 -2.38 -0.01 3.41 16 16 C 0.02 0.71 6.01 72.48 0.44 1.15 16 17 O -0.39 -12.85 11.65 -148.98 -1.74 -14.59 16 18 C 0.01 0.31 7.37 72.49 0.53 0.84 16 19 C 0.08 2.31 3.56 31.67 0.11 2.42 16 20 H 0.09 2.36 6.30 -2.39 -0.02 2.35 16 21 O -0.57 -15.13 13.31 -148.98 -1.98 -17.11 16 22 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.03 1.21 6.74 -2.39 -0.02 1.20 16 24 H 0.04 2.30 6.84 -2.39 -0.02 2.28 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.08 2.32 6.03 -2.39 -0.01 2.31 16 27 H 0.06 2.57 6.40 -2.39 -0.02 2.55 16 28 H 0.01 0.55 6.13 -2.38 -0.01 0.54 16 29 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.06 2.33 5.68 -2.38 -0.01 2.32 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.12 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.40 5.74 9.10 -74.05 -0.67 5.06 16 Total: -1.00 -64.19 258.31 -1.40 -65.60 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.44 Total: 11.83 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 3.62 Total: -12.23 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -3.78 Total: -78.79 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -3.72 Total: -31.70 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.19 -1.40 -65.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.901 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds