Wall clock time and date at job start Mon Mar 30 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47610 * 2 1 4 4 C 1.50699 * 109.47204 * 239.99743 * 2 1 3 5 5 H 1.08001 * 120.00246 * 240.00338 * 4 2 1 6 6 C 1.37877 * 119.99981 * 60.00274 * 4 2 1 7 7 N 1.31518 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00275 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47095 * 59.99634 * 8 6 4 10 10 H 1.48495 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47176 * 299.99874 * 8 6 4 12 12 N 1.46908 * 109.47288 * 120.00021 * 2 1 3 13 13 C 1.46903 * 110.99885 * 63.82462 * 12 2 1 14 14 C 1.46897 * 111.00258 * 187.78021 * 12 2 1 15 15 H 1.09003 * 110.56370 * 292.23813 * 14 12 2 16 16 C 1.54792 * 110.55484 * 55.07551 * 14 12 2 17 17 O 1.44419 * 104.80303 * 142.66579 * 16 14 12 18 18 C 1.44425 * 105.27706 * 319.41071 * 17 16 14 19 19 C 1.54477 * 104.80058 * 40.51075 * 18 17 16 20 20 H 1.08995 * 110.51354 * 217.37434 * 19 18 17 21 21 O 1.42900 * 110.51171 * 94.80328 * 19 18 17 22 22 H 1.09003 * 109.47280 * 53.26355 * 1 2 3 23 23 H 1.09004 * 109.47574 * 173.26676 * 1 2 3 24 24 H 1.09004 * 109.47041 * 293.26540 * 1 2 3 25 25 H 0.96992 * 120.00113 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46865 * 183.95644 * 13 12 2 27 27 H 1.09005 * 109.46859 * 303.95544 * 13 12 2 28 28 H 1.08999 * 109.46802 * 63.95312 * 13 12 2 29 29 H 1.08998 * 110.43896 * 23.80064 * 16 14 12 30 30 H 1.09003 * 110.40526 * 261.51234 * 16 14 12 31 31 H 1.09000 * 110.37260 * 281.68343 * 18 17 16 32 32 H 1.08996 * 110.37324 * 159.34592 * 18 17 16 33 33 H 0.96703 * 114.00088 * 63.30742 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 7 2.0197 -0.6925 1.1995 13 6 1.6248 -2.1074 1.1885 14 6 3.4762 -0.5535 1.3299 15 1 3.9855 -1.0974 0.5344 16 6 3.8830 0.9400 1.3159 17 8 4.9680 1.0358 2.2643 18 6 4.5817 0.1920 3.3709 19 6 3.9460 -1.0534 2.7143 20 1 3.0975 -1.4039 3.3020 21 8 4.9158 -2.0928 2.5686 22 1 -0.3634 0.6147 -0.8236 23 1 -0.3634 -1.0206 -0.1205 24 1 -0.3633 0.4059 0.9441 25 1 0.7082 1.1608 -3.4844 26 1 1.9390 -2.5795 2.1194 27 1 0.5416 -2.1816 1.0911 28 1 2.1007 -2.6109 0.3470 29 1 3.0474 1.5650 1.6308 30 1 4.2211 1.2325 0.3218 31 1 3.8533 0.7023 4.0010 32 1 5.4570 -0.0921 3.9550 33 1 5.2666 -2.4237 3.4068 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306442621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:24 Heat of formation + Delta-G solvation = -83.506682 kcal Electronic energy + Delta-G solvation = -15600.462618 eV Core-core repulsion = 13047.665336 eV Total energy + Delta-G solvation = -2552.797282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48908 -36.47429 -35.75786 -32.68937 -30.02070 -28.27812 -28.17970 -25.19507 -24.29705 -22.58925 -20.38271 -19.19160 -17.08487 -16.37453 -16.11802 -15.75701 -14.83018 -14.67370 -13.72609 -13.44219 -13.25667 -12.63400 -12.52902 -12.32739 -11.83246 -11.35839 -11.16704 -10.94232 -10.74902 -10.68300 -10.45737 -10.15348 -10.06434 -9.86831 -9.76108 -9.29712 -9.12188 -8.42200 -7.27281 -6.02841 -4.14726 3.28251 3.32980 3.36548 4.26631 4.35064 4.39522 4.94701 5.11841 5.20831 5.25166 5.46275 5.71965 5.92011 5.97216 5.98441 6.17101 6.42389 6.45436 6.67639 6.74156 6.88564 6.99060 7.06195 7.14324 7.49401 7.67774 7.83438 7.89145 8.09104 8.22392 8.36633 8.93228 9.53202 10.98458 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034019 B = 0.009833 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.872873 B = 2846.887500 C = 2925.107324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.203 3.797 3 H 0.043 0.957 4 C -0.546 4.546 5 H 0.056 0.944 6 C 0.070 3.930 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.035 3.965 14 C 0.071 3.929 15 H 0.069 0.931 16 C 0.059 3.941 17 O -0.379 6.379 18 C 0.021 3.979 19 C 0.070 3.930 20 H 0.077 0.923 21 O -0.559 6.559 22 H 0.081 0.919 23 H 0.028 0.972 24 H 0.015 0.985 25 H 0.262 0.738 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -2.561 9.788 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.061 0.939 4 C -0.585 4.585 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.259 5.259 13 C -0.114 4.114 14 C -0.039 4.039 15 H 0.087 0.913 16 C -0.018 4.018 17 O -0.297 6.297 18 C -0.057 4.057 19 C 0.011 3.989 20 H 0.094 0.906 21 O -0.363 6.363 22 H 0.100 0.900 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.253 -1.970 9.390 10.130 hybrid contribution 0.554 -1.125 -1.061 1.643 sum 3.807 -3.095 8.328 9.666 Atomic orbital electron populations 1.21765 0.97439 1.00061 0.99262 1.19356 0.92530 0.94243 0.84166 0.93926 1.21651 1.32131 1.13085 0.91636 0.92552 1.24888 0.94731 0.94791 0.98865 1.69877 1.36243 1.22653 1.23658 0.86721 0.79325 0.79869 0.82515 1.20338 1.21207 1.20254 1.62650 1.08082 1.12770 1.42357 1.22184 1.00841 0.89527 0.98848 1.22682 0.91102 0.95642 0.94447 0.91336 1.23552 0.89279 0.95370 0.93555 1.89089 1.42561 1.67753 1.30318 1.24039 0.99549 0.91509 0.90606 1.23317 0.90293 0.87149 0.98170 0.90553 1.86610 1.60164 1.54810 1.34727 0.90044 0.95250 0.96583 0.92795 0.94152 0.91837 0.94849 0.91213 0.88395 0.91780 0.89595 0.78331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.55 37.15 0.32 -2.70 16 2 C 0.20 4.94 2.10 -68.86 -0.14 4.79 16 3 H 0.04 1.11 6.40 -51.93 -0.33 0.78 16 4 C -0.55 -14.54 7.22 -34.44 -0.25 -14.79 16 5 H 0.06 1.54 5.86 -52.49 -0.31 1.23 16 6 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 7 N -0.89 -24.68 11.40 55.43 0.63 -24.05 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.53 -11.22 4.50 -226.22 -1.02 -12.24 16 13 C 0.03 0.69 8.69 60.07 0.52 1.21 16 14 C 0.07 1.42 2.29 -65.98 -0.15 1.27 16 15 H 0.07 1.59 7.15 -51.93 -0.37 1.22 16 16 C 0.06 1.15 5.90 38.10 0.22 1.38 16 17 O -0.38 -6.98 11.65 -35.23 -0.41 -7.40 16 18 C 0.02 0.30 7.38 37.93 0.28 0.58 16 19 C 0.07 1.13 3.65 -25.16 -0.09 1.04 16 20 H 0.08 1.16 6.94 -51.93 -0.36 0.80 16 21 O -0.56 -8.67 13.30 -35.23 -0.47 -9.14 16 22 H 0.08 2.10 6.28 -51.93 -0.33 1.78 16 23 H 0.03 0.68 6.75 -51.93 -0.35 0.33 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.04 0.70 6.78 -51.93 -0.35 0.34 16 27 H 0.06 1.24 6.36 -51.93 -0.33 0.91 16 28 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 29 H 0.07 1.35 7.49 -51.93 -0.39 0.96 16 30 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.37 3.65 9.12 45.56 0.42 4.06 16 LS Contribution 259.12 15.07 3.90 3.90 Total: -1.00 -29.32 259.12 -5.63 -34.95 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.86 Total: 3.15 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 0.61 Total: -5.42 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.39 Total: -36.29 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.88 Total: -16.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.32 -5.63 -34.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306442621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.559 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds