Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.50700 * 109.47046 * 239.99953 * 2 1 3 5 5 H 1.08001 * 119.99444 * 240.00313 * 4 2 1 6 6 C 1.37874 * 120.00256 * 59.99922 * 4 2 1 7 7 N 1.31516 * 119.99606 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 90.00553 * 8 6 4 10 10 H 1.48500 * 109.47062 * 210.00328 * 8 6 4 11 11 H 1.48498 * 109.47049 * 330.00096 * 8 6 4 12 12 N 1.46906 * 109.46828 * 119.99810 * 2 1 3 13 13 C 1.46901 * 110.99949 * 274.99937 * 12 2 1 14 14 H 1.08996 * 112.49540 * 334.71901 * 13 12 2 15 15 C 1.53042 * 113.14841 * 104.50853 * 13 12 2 16 16 S 1.81425 * 89.93235 * 148.16875 * 15 13 12 17 17 C 1.53042 * 113.18760 * 204.89825 * 13 12 2 18 18 C 1.53002 * 113.15278 * 327.10834 * 17 13 12 19 19 C 1.53002 * 113.14692 * 96.54762 * 17 13 12 20 20 H 1.09003 * 109.47093 * 299.99984 * 1 2 3 21 21 H 1.09000 * 109.46822 * 59.99945 * 1 2 3 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 0.96997 * 119.99806 * 179.97438 * 7 6 4 24 24 H 1.00900 * 110.99736 * 151.04635 * 12 2 1 25 25 H 1.09002 * 113.14805 * 263.44826 * 15 13 12 26 26 H 1.09003 * 113.15177 * 32.89270 * 15 13 12 27 27 H 1.08993 * 109.46807 * 59.99915 * 18 17 13 28 28 H 1.08994 * 109.47091 * 179.97438 * 18 17 13 29 29 H 1.08999 * 109.47088 * 300.00003 * 18 17 13 30 30 H 1.09009 * 109.46753 * 59.99674 * 19 17 13 31 31 H 1.08998 * 109.47372 * 179.97438 * 19 17 13 32 32 H 1.09004 * 109.47441 * 300.00031 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 2.1941 1.2638 2.0444 15 6 0.9487 0.0062 3.3519 16 16 2.0508 0.5126 4.7011 17 6 3.0991 -0.2084 3.4066 18 6 3.2386 -1.7275 3.5236 19 6 4.4508 0.4943 3.2642 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7096 1.1617 -3.4843 24 1 2.9173 -1.1205 1.0288 25 1 0.1102 0.6870 3.2051 26 1 0.6331 -1.0347 3.4243 27 1 3.5651 -2.1370 2.5678 28 1 3.9744 -1.9667 4.2913 29 1 2.2760 -2.1610 3.7949 30 1 4.3121 1.5713 3.3591 31 1 5.1259 0.1450 4.0454 32 1 4.8770 0.2675 2.2869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306528666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = 12.068068 kcal Electronic energy + Delta-G solvation = -13042.906256 eV Core-core repulsion = 10937.006277 eV Total energy + Delta-G solvation = -2105.899979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.30993 -34.58270 -31.92225 -30.01578 -27.64900 -27.35483 -25.13523 -22.40970 -20.37869 -19.26456 -16.63269 -15.75239 -15.13511 -15.03962 -14.44809 -13.75581 -13.38567 -13.11824 -12.60421 -12.38055 -11.99948 -11.87609 -11.41820 -11.25318 -11.04097 -10.98781 -10.73726 -10.47920 -10.32429 -10.18006 -9.98057 -9.54619 -8.85406 -8.52724 -7.57082 -7.47445 -6.07542 -4.14745 2.05189 2.28450 3.26624 3.33493 3.35641 4.35325 4.62683 4.85780 5.15271 5.18734 5.23879 5.47352 5.69026 5.72956 5.84449 5.89620 6.00260 6.04031 6.19342 6.24487 6.46537 6.82086 7.09484 7.15635 7.42144 7.71653 7.81482 8.19326 8.28046 8.54297 8.94427 9.51588 10.98510 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048938 B = 0.007889 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.010742 B = 3548.423408 C = 3808.303634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.668 5.668 13 C 0.093 3.907 14 H 0.084 0.916 15 C -0.057 4.057 16 S -0.333 6.333 17 C -0.023 4.023 18 C -0.119 4.119 19 C -0.135 4.135 20 H 0.005 0.995 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.337 0.663 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -1.947 9.045 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.301 5.301 13 C -0.020 4.020 14 H 0.101 0.899 15 C -0.207 4.207 16 S -0.107 6.107 17 C -0.133 4.133 18 C -0.178 4.178 19 C -0.193 4.193 20 H 0.024 0.976 21 H 0.099 0.901 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.158 0.842 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.934 -1.450 10.387 10.891 hybrid contribution 0.877 -0.321 -2.016 2.222 sum 3.811 -1.771 8.371 9.367 Atomic orbital electron populations 1.21725 0.97741 0.99364 0.99440 1.19225 0.92772 0.92355 0.85385 0.97822 1.21234 1.31676 1.12594 0.90415 0.92198 1.24912 0.95003 0.94949 0.99064 1.69894 1.36507 1.22741 1.23549 0.86525 0.79209 0.79335 0.82483 1.20613 1.21275 1.19935 1.60904 1.31894 1.31629 1.05718 1.22975 0.90247 0.97279 0.91516 0.89867 1.24557 1.00608 1.04618 0.90872 1.88694 1.11370 1.79423 1.31219 1.23940 0.98119 0.98714 0.92508 1.21715 1.02600 0.91174 1.02332 1.21841 0.94491 1.00573 1.02430 0.97632 0.90113 0.94951 0.92865 0.84207 0.89425 0.87515 0.90603 0.92567 0.91370 0.91591 0.92339 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.19 37.16 0.34 -2.63 16 2 C 0.21 5.04 2.60 -68.86 -0.18 4.86 16 3 H 0.00 0.11 7.46 -51.93 -0.39 -0.28 16 4 C -0.52 -13.66 8.59 -34.44 -0.30 -13.96 16 5 H 0.06 1.54 7.62 -52.49 -0.40 1.14 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.67 -13.05 5.79 -111.76 -0.65 -13.70 16 13 C 0.09 1.59 3.00 -67.67 -0.20 1.39 16 14 H 0.08 1.56 7.45 -51.93 -0.39 1.17 16 15 C -0.06 -0.93 7.11 37.18 0.26 -0.66 16 16 S -0.33 -5.26 23.93 -107.50 -2.57 -7.83 16 17 C -0.02 -0.33 1.17 -90.60 -0.11 -0.44 16 18 C -0.12 -1.58 8.48 37.16 0.32 -1.26 16 19 C -0.13 -1.79 9.13 37.16 0.34 -1.46 16 20 H 0.00 0.10 7.67 -51.93 -0.40 -0.30 16 21 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.34 6.38 6.66 -39.29 -0.26 6.12 16 25 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 26 H 0.11 1.68 7.12 -51.93 -0.37 1.31 16 27 H 0.08 1.00 6.80 -51.93 -0.35 0.64 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.93 6.83 -51.93 -0.35 0.57 16 30 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -26.87 267.17 -8.10 -34.96 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.89 Total: 3.55 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 0.38 Total: -12.56 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.02 Total: -37.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.57 Total: -7.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.87 -8.10 -34.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds