Wall clock time and date at job start Mon Mar 30 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47289 * 2 1 4 4 C 1.50700 * 109.47046 * 239.99953 * 2 1 3 5 5 H 1.08001 * 119.99444 * 240.00313 * 4 2 1 6 6 C 1.37874 * 120.00256 * 59.99922 * 4 2 1 7 7 N 1.31516 * 119.99606 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 90.00553 * 8 6 4 10 10 H 1.48500 * 109.47062 * 210.00328 * 8 6 4 11 11 H 1.48498 * 109.47049 * 330.00096 * 8 6 4 12 12 N 1.46906 * 109.46828 * 119.99810 * 2 1 3 13 13 C 1.46901 * 110.99949 * 274.99937 * 12 2 1 14 14 H 1.08996 * 112.49540 * 334.71901 * 13 12 2 15 15 C 1.53042 * 113.14841 * 104.50853 * 13 12 2 16 16 S 1.81425 * 89.93235 * 148.16875 * 15 13 12 17 17 C 1.53042 * 113.18760 * 204.89825 * 13 12 2 18 18 C 1.53002 * 113.15278 * 327.10834 * 17 13 12 19 19 C 1.53002 * 113.14692 * 96.54762 * 17 13 12 20 20 H 1.09003 * 109.47093 * 299.99984 * 1 2 3 21 21 H 1.09000 * 109.46822 * 59.99945 * 1 2 3 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 0.96997 * 119.99806 * 179.97438 * 7 6 4 24 24 H 1.00900 * 110.99736 * 151.04635 * 12 2 1 25 25 H 1.09002 * 113.14805 * 263.44826 * 15 13 12 26 26 H 1.09003 * 113.15177 * 32.89270 * 15 13 12 27 27 H 1.08993 * 109.46807 * 59.99915 * 18 17 13 28 28 H 1.08994 * 109.47091 * 179.97438 * 18 17 13 29 29 H 1.08999 * 109.47088 * 300.00003 * 18 17 13 30 30 H 1.09009 * 109.46753 * 59.99674 * 19 17 13 31 31 H 1.08998 * 109.47372 * 179.97438 * 19 17 13 32 32 H 1.09004 * 109.47441 * 300.00031 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 2.1941 1.2638 2.0444 15 6 0.9487 0.0062 3.3519 16 16 2.0508 0.5126 4.7011 17 6 3.0991 -0.2084 3.4066 18 6 3.2386 -1.7275 3.5236 19 6 4.4508 0.4943 3.2642 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7096 1.1617 -3.4843 24 1 2.9173 -1.1205 1.0288 25 1 0.1102 0.6870 3.2051 26 1 0.6331 -1.0347 3.4243 27 1 3.5651 -2.1370 2.5678 28 1 3.9744 -1.9667 4.2913 29 1 2.2760 -2.1610 3.7949 30 1 4.3121 1.5713 3.3591 31 1 5.1259 0.1450 4.0454 32 1 4.8770 0.2675 2.2869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306528666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:15 Heat of formation + Delta-G solvation = -3.645044 kcal Electronic energy + Delta-G solvation = -13043.587627 eV Core-core repulsion = 10937.006277 eV Total energy + Delta-G solvation = -2106.581351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70081 -36.36152 -33.72574 -31.38661 -29.40956 -28.43097 -27.16630 -23.73104 -22.14860 -20.73622 -18.50951 -17.15136 -16.77078 -16.44086 -16.03942 -15.37693 -14.72450 -14.60309 -14.10579 -13.85615 -13.29862 -13.18297 -13.05224 -12.82701 -12.65780 -12.46713 -12.26877 -12.21002 -12.09757 -12.04187 -11.31377 -11.08332 -10.67611 -10.54429 -9.17706 -8.81536 -8.10751 -6.24796 0.81514 0.98888 1.44751 1.46105 1.55320 2.43457 3.18202 3.34585 3.49340 3.84245 4.02653 4.11352 4.35069 4.59113 4.70229 4.77673 4.81058 4.87070 4.93399 4.97510 5.12936 5.16596 5.24567 5.36876 5.50149 5.69374 5.87809 6.24832 6.44654 6.74163 7.00158 7.45765 8.94509 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048938 B = 0.007889 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.010742 B = 3548.423408 C = 3808.303634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.028 1.028 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.658 5.658 13 C 0.087 3.913 14 H 0.065 0.935 15 C -0.055 4.055 16 S -0.337 6.337 17 C -0.012 4.012 18 C -0.117 4.117 19 C -0.134 4.134 20 H 0.021 0.979 21 H 0.054 0.946 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.342 0.658 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -3.081 9.597 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.010 1.010 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.291 5.291 13 C -0.026 4.026 14 H 0.083 0.917 15 C -0.204 4.204 16 S -0.111 6.111 17 C -0.122 4.122 18 C -0.176 4.176 19 C -0.192 4.192 20 H 0.040 0.960 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.163 0.837 25 H 0.102 0.898 26 H 0.132 0.868 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.888 -2.592 10.962 11.917 hybrid contribution 0.584 0.066 -2.130 2.209 sum 4.471 -2.527 8.833 10.217 Atomic orbital electron populations 1.21545 0.97764 0.98907 0.98921 1.18994 0.92733 0.90807 0.86721 1.01022 1.21590 1.31582 1.12706 0.91407 0.91825 1.25706 0.95236 0.95627 1.02029 1.70028 1.37580 1.24060 1.24081 0.85527 0.78948 0.78129 0.78831 1.20341 1.21303 1.18936 1.60794 1.32239 1.31434 1.04623 1.22967 0.92463 0.95927 0.91272 0.91716 1.24483 1.00205 1.04988 0.90711 1.88736 1.11593 1.79791 1.30948 1.23932 0.97921 0.99908 0.90448 1.21726 1.03096 0.89600 1.03131 1.21850 0.93978 1.00114 1.03291 0.95995 0.92768 0.95162 0.92958 0.83714 0.89751 0.86816 0.90376 0.90582 0.91696 0.92220 0.90366 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 9.19 71.98 0.66 -4.76 16 2 C 0.22 10.43 2.60 44.17 0.11 10.54 16 3 H -0.03 -1.50 7.46 -2.39 -0.02 -1.52 16 4 C -0.53 -27.91 8.59 25.60 0.22 -27.69 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -51.80 11.32 21.45 0.24 -51.56 16 8 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 N -0.66 -25.20 5.79 -507.51 -2.94 -28.14 16 13 C 0.09 2.91 3.00 44.94 0.13 3.04 16 14 H 0.07 2.45 7.45 -2.39 -0.02 2.43 16 15 C -0.05 -1.70 7.11 72.00 0.51 -1.19 16 16 S -0.34 -10.08 23.93 -56.49 -1.35 -11.44 16 17 C -0.01 -0.33 1.17 -10.78 -0.01 -0.35 16 18 C -0.12 -2.78 8.48 71.98 0.61 -2.17 16 19 C -0.13 -3.29 9.13 71.98 0.66 -2.64 16 20 H 0.02 0.93 7.67 -2.39 -0.02 0.91 16 21 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 22 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 24 H 0.34 12.51 6.66 -89.69 -0.60 11.92 16 25 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 26 H 0.11 3.40 7.12 -2.39 -0.02 3.38 16 27 H 0.08 1.85 6.80 -2.39 -0.02 1.84 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.60 6.83 -2.39 -0.02 1.59 16 30 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -56.04 267.17 1.82 -54.22 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.50 Total: 16.78 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.35 Total: -24.06 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -2.70 Total: -79.70 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -1.35 Total: -11.44 kcal Total: -56.04 1.82 -54.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.578 kcal (2) G-P(sol) polarization free energy of solvation -56.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds