Wall clock time and date at job start Mon Mar 30 2020 02:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.46959 * 2 1 4 4 C 1.81398 * 102.99715 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.52893 * 55.07849 * 4 3 2 6 6 C 1.53042 * 109.49811 * 175.16234 * 4 3 2 7 7 C 1.53037 * 109.53889 * 181.31391 * 6 4 3 8 8 C 1.53618 * 109.24161 * 298.50715 * 7 6 4 9 9 N 1.46927 * 108.54374 * 54.85710 * 8 7 6 10 10 C 1.36937 * 120.63017 * 126.36779 * 9 8 7 11 11 H 1.08004 * 120.00064 * 332.04195 * 10 9 8 12 12 C 1.38805 * 120.00308 * 151.77568 * 10 9 8 13 13 N 1.31625 * 119.99373 * 343.02964 * 12 10 9 14 14 Si 1.86791 * 120.00495 * 163.03141 * 12 10 9 15 15 H 1.48501 * 109.47546 * 89.99841 * 14 12 10 16 16 H 1.48504 * 109.47414 * 209.99656 * 14 12 10 17 17 H 1.48502 * 109.47042 * 329.99874 * 14 12 10 18 18 C 1.46919 * 118.73655 * 306.09263 * 9 8 7 19 19 H 1.08998 * 109.47676 * 300.00245 * 1 2 3 20 20 H 1.09008 * 109.46861 * 60.00634 * 1 2 3 21 21 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47314 * 239.99356 * 2 1 3 23 23 H 1.09001 * 109.46597 * 120.00018 * 2 1 3 24 24 H 1.09000 * 109.46045 * 301.33553 * 6 4 3 25 25 H 1.09000 * 109.46367 * 61.30102 * 6 4 3 26 26 H 1.08998 * 109.49932 * 58.58578 * 7 6 4 27 27 H 1.09007 * 109.49849 * 178.67883 * 7 6 4 28 28 H 1.08996 * 109.74373 * 295.11497 * 8 7 6 29 29 H 1.09010 * 109.66561 * 174.55047 * 8 7 6 30 30 H 0.97000 * 119.99551 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.58591 * 173.64408 * 18 9 8 32 32 H 1.08996 * 109.58625 * 293.92701 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2331 0.8802 -0.8413 6 6 4.6067 2.8765 -0.1208 7 6 6.1268 2.7025 -0.1532 8 6 6.5901 2.0533 1.1597 9 7 5.8438 0.8022 1.3512 10 6 6.5039 -0.3775 1.5696 11 1 7.4997 -0.5199 1.1765 12 6 5.8955 -1.3882 2.3010 13 7 4.8539 -1.1167 3.0585 14 14 6.5547 -3.1336 2.2102 15 1 7.5826 -3.3300 3.2637 16 1 5.4419 -4.0946 2.4191 17 1 7.1636 -3.3639 0.8754 18 6 4.3757 0.8421 1.3100 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5139 0.8900 24 1 4.2770 3.3615 -1.0396 25 1 4.3300 3.4930 0.7345 26 1 6.4022 2.0657 -0.9938 27 1 6.6023 3.6771 -0.2634 28 1 6.3933 2.7274 1.9933 29 1 7.6573 1.8376 1.1057 30 1 4.4289 -1.8229 3.5699 31 1 3.9812 -0.1730 1.3550 32 1 4.0019 1.4173 2.1570 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306620499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:07 Heat of formation + Delta-G solvation = 0.860180 kcal Electronic energy + Delta-G solvation = -13050.937442 eV Core-core repulsion = 10944.551453 eV Total energy + Delta-G solvation = -2106.385990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.39375 -33.14633 -32.44827 -30.55144 -29.76884 -25.32619 -23.38811 -22.20490 -21.80106 -19.16499 -16.85557 -15.66551 -15.00080 -14.42154 -14.26197 -14.02067 -13.63816 -13.11020 -12.91429 -12.51743 -12.25045 -11.91941 -11.23116 -11.18763 -11.03375 -10.75237 -10.54805 -10.49061 -10.28978 -10.02270 -9.87026 -9.56020 -9.12852 -8.52757 -7.15288 -6.71808 -5.84228 -3.26855 2.27414 3.16034 3.33683 3.40535 3.42854 4.45467 5.26662 5.29839 5.31929 5.39974 5.55638 5.61112 5.66693 5.78562 5.95735 6.00079 6.12788 6.22982 6.30409 6.30985 6.45099 6.54390 6.68232 6.77691 6.97835 7.23496 7.56564 7.74145 8.38477 9.14635 9.78210 10.35657 11.23805 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.012285 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.975299 B = 2278.684121 C = 3216.419887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 S -0.296 6.296 4 C -0.065 4.065 5 H 0.076 0.924 6 C -0.089 4.089 7 C -0.129 4.129 8 C 0.142 3.858 9 N -0.590 5.590 10 C -0.255 4.255 11 H 0.067 0.933 12 C 0.003 3.997 13 N -0.901 5.901 14 Si 0.901 3.099 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.180 3.820 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.254 0.746 31 H 0.088 0.912 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 3.864 -6.093 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.232 4.232 3 S -0.068 6.068 4 C -0.196 4.196 5 H 0.095 0.905 6 C -0.128 4.128 7 C -0.170 4.170 8 C 0.015 3.985 9 N -0.313 5.313 10 C -0.385 4.385 11 H 0.085 0.915 12 C -0.196 4.196 13 N -0.545 5.545 14 Si 0.730 3.270 15 H -0.212 1.212 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.053 3.947 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.886 4.659 -5.985 9.022 hybrid contribution 0.986 -2.069 0.005 2.292 sum -3.899 2.590 -5.980 7.594 Atomic orbital electron populations 1.21496 0.93072 1.01898 1.02568 1.23196 0.99060 0.95634 1.05326 1.86278 1.09099 1.13364 1.98079 1.24119 0.89438 1.00711 1.05288 0.90522 1.21203 0.95522 0.94839 1.01201 1.22116 0.94547 0.99767 1.00587 1.21057 0.95625 0.88556 0.93230 1.44110 1.00942 1.03149 1.83082 1.19204 1.00778 0.91147 1.27335 0.91548 1.25067 0.98877 0.99351 0.96328 1.70040 1.24161 1.31692 1.28584 0.86323 0.78050 0.84632 0.77969 1.21241 1.21498 1.20445 1.21097 0.83911 1.00381 0.89341 0.91886 0.92311 0.91664 0.90774 0.89264 0.92822 0.91903 0.92276 0.92572 0.96166 0.92628 0.93546 0.89350 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.92 37.16 0.37 -1.38 16 2 C -0.08 -1.39 6.38 37.16 0.24 -1.15 16 3 S -0.30 -5.40 21.15 -107.50 -2.27 -7.68 16 4 C -0.07 -1.31 2.80 -26.61 -0.07 -1.39 16 5 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 6 C -0.09 -1.59 5.17 -26.69 -0.14 -1.73 16 7 C -0.13 -2.28 6.10 -26.39 -0.16 -2.44 16 8 C 0.14 3.00 6.54 -3.49 -0.02 2.98 16 9 N -0.59 -14.91 2.99 -172.06 -0.51 -15.43 16 10 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 11 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 12 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 13 N -0.90 -25.96 11.18 55.49 0.62 -25.34 16 14 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.18 4.35 4.42 -3.71 -0.02 4.33 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 23 H 0.09 1.65 7.31 -51.92 -0.38 1.27 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.14 7.93 -51.92 -0.41 0.73 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 2.35 5.10 -51.93 -0.26 2.09 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 268.16 15.07 4.04 4.04 Total: -1.00 -28.70 268.16 -8.45 -37.14 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.26 Total: -1.30 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.04 Total: -7.93 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.11 Total: -40.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.27 Total: -7.68 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.70 -8.45 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306620499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds