Wall clock time and date at job start Mon Mar 30 2020 02:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.46959 * 2 1 4 4 C 1.81398 * 102.99715 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.52893 * 55.07849 * 4 3 2 6 6 C 1.53042 * 109.49811 * 175.16234 * 4 3 2 7 7 C 1.53037 * 109.53889 * 181.31391 * 6 4 3 8 8 C 1.53618 * 109.24161 * 298.50715 * 7 6 4 9 9 N 1.46927 * 108.54374 * 54.85710 * 8 7 6 10 10 C 1.36937 * 120.63017 * 126.36779 * 9 8 7 11 11 H 1.08004 * 120.00064 * 332.04195 * 10 9 8 12 12 C 1.38805 * 120.00308 * 151.77568 * 10 9 8 13 13 N 1.31625 * 119.99373 * 343.02964 * 12 10 9 14 14 Si 1.86791 * 120.00495 * 163.03141 * 12 10 9 15 15 H 1.48501 * 109.47546 * 89.99841 * 14 12 10 16 16 H 1.48504 * 109.47414 * 209.99656 * 14 12 10 17 17 H 1.48502 * 109.47042 * 329.99874 * 14 12 10 18 18 C 1.46919 * 118.73655 * 306.09263 * 9 8 7 19 19 H 1.08998 * 109.47676 * 300.00245 * 1 2 3 20 20 H 1.09008 * 109.46861 * 60.00634 * 1 2 3 21 21 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47314 * 239.99356 * 2 1 3 23 23 H 1.09001 * 109.46597 * 120.00018 * 2 1 3 24 24 H 1.09000 * 109.46045 * 301.33553 * 6 4 3 25 25 H 1.09000 * 109.46367 * 61.30102 * 6 4 3 26 26 H 1.08998 * 109.49932 * 58.58578 * 7 6 4 27 27 H 1.09007 * 109.49849 * 178.67883 * 7 6 4 28 28 H 1.08996 * 109.74373 * 295.11497 * 8 7 6 29 29 H 1.09010 * 109.66561 * 174.55047 * 8 7 6 30 30 H 0.97000 * 119.99551 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.58591 * 173.64408 * 18 9 8 32 32 H 1.08996 * 109.58625 * 293.92701 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2331 0.8802 -0.8413 6 6 4.6067 2.8765 -0.1208 7 6 6.1268 2.7025 -0.1532 8 6 6.5901 2.0533 1.1597 9 7 5.8438 0.8022 1.3512 10 6 6.5039 -0.3775 1.5696 11 1 7.4997 -0.5199 1.1765 12 6 5.8955 -1.3882 2.3010 13 7 4.8539 -1.1167 3.0585 14 14 6.5547 -3.1336 2.2102 15 1 7.5826 -3.3300 3.2637 16 1 5.4419 -4.0946 2.4191 17 1 7.1636 -3.3639 0.8754 18 6 4.3757 0.8421 1.3100 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5139 0.8900 24 1 4.2770 3.3615 -1.0396 25 1 4.3300 3.4930 0.7345 26 1 6.4022 2.0657 -0.9938 27 1 6.6023 3.6771 -0.2634 28 1 6.3933 2.7274 1.9933 29 1 7.6573 1.8376 1.1057 30 1 4.4289 -1.8229 3.5699 31 1 3.9812 -0.1730 1.3550 32 1 4.0019 1.4173 2.1570 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306620499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:07 Heat of formation + Delta-G solvation = -14.689520 kcal Electronic energy + Delta-G solvation = -13051.611728 eV Core-core repulsion = 10944.551453 eV Total energy + Delta-G solvation = -2107.060275 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13259 -35.03598 -33.68286 -32.39788 -31.52966 -27.27686 -24.75667 -23.92273 -23.45812 -20.85061 -18.81338 -17.25425 -16.82250 -15.95225 -15.82125 -15.53899 -15.27732 -14.86412 -14.56019 -14.26152 -13.77548 -13.17773 -12.99808 -12.80353 -12.57372 -12.50922 -12.33561 -12.10295 -12.08052 -11.70153 -11.46466 -11.20880 -10.75100 -10.58586 -8.78245 -8.60658 -7.92040 -5.38706 0.81696 1.43121 1.44725 1.54595 1.66434 2.47640 3.22147 3.72058 3.88785 4.00989 4.01800 4.11091 4.23924 4.36163 4.52314 4.56701 4.76564 4.86374 4.91118 4.93767 5.05167 5.14722 5.16630 5.19518 5.24922 5.44316 5.59180 5.62807 6.33080 7.08010 7.78608 8.31826 9.13641 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.012285 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.975299 B = 2278.684121 C = 3216.419887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 S -0.289 6.289 4 C -0.061 4.061 5 H 0.070 0.930 6 C -0.085 4.085 7 C -0.117 4.117 8 C 0.134 3.866 9 N -0.610 5.610 10 C -0.268 4.268 11 H 0.069 0.931 12 C -0.048 4.048 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.270 1.270 18 C 0.195 3.805 19 H 0.060 0.940 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.251 0.749 31 H 0.058 0.942 32 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 4.254 -7.592 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.232 4.232 3 S -0.061 6.061 4 C -0.191 4.191 5 H 0.089 0.911 6 C -0.123 4.123 7 C -0.157 4.157 8 C 0.009 3.991 9 N -0.334 5.334 10 C -0.398 4.398 11 H 0.087 0.913 12 C -0.244 4.244 13 N -0.578 5.578 14 Si 0.793 3.207 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.195 1.195 18 C 0.067 3.933 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -4.926 5.075 -7.502 10.310 hybrid contribution 0.990 -2.158 0.504 2.427 sum -3.936 2.917 -6.998 8.542 Atomic orbital electron populations 1.21493 0.90247 1.03499 1.03109 1.23297 1.01427 0.94169 1.04277 1.86195 1.07138 1.14833 1.97929 1.23849 0.91333 1.01743 1.02197 0.91124 1.21222 0.95551 0.93285 1.02284 1.21992 0.94443 1.01248 0.98042 1.21261 0.95616 0.87136 0.95116 1.44406 1.01516 1.04080 1.83393 1.19550 1.01062 0.92307 1.26906 0.91302 1.25824 0.99394 1.02932 0.96265 1.70196 1.25555 1.32470 1.29627 0.85311 0.77250 0.79954 0.78183 1.20960 1.21733 1.19452 1.20764 0.83626 0.98454 0.90463 0.92129 0.90901 0.89534 0.90094 0.92036 0.90152 0.92363 0.92247 0.88844 0.96710 0.92263 0.94005 0.92373 0.98359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.92 71.98 0.71 -2.38 16 2 C -0.08 -2.71 6.38 71.98 0.46 -2.26 16 3 S -0.29 -10.29 21.15 -56.49 -1.19 -11.49 16 4 C -0.06 -2.42 2.80 30.67 0.09 -2.33 16 5 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 6 C -0.08 -2.86 5.17 30.62 0.16 -2.70 16 7 C -0.12 -3.83 6.10 30.81 0.19 -3.64 16 8 C 0.13 5.58 6.54 86.51 0.57 6.14 16 9 N -0.61 -31.21 2.99 -698.27 -2.09 -33.29 16 10 C -0.27 -14.85 9.58 84.03 0.81 -14.05 16 11 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 12 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 13 N -0.93 -55.37 11.18 21.65 0.24 -55.12 16 14 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C 0.19 9.63 4.42 86.37 0.38 10.02 16 19 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 23 H 0.06 2.35 7.31 -2.39 -0.02 2.33 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.41 8.14 -2.38 -0.02 2.40 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.06 3.22 5.10 -2.39 -0.01 3.20 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -62.11 268.16 3.83 -58.28 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.06 Total: 8.42 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 3.78 Total: -13.50 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -1.84 Total: -88.42 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -1.19 Total: -11.49 kcal Total: -62.11 3.83 -58.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306620499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.587 kcal (2) G-P(sol) polarization free energy of solvation -62.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds