Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46852 * 110.99911 * 170.78909 * 12 2 1 14 14 C 1.53036 * 109.51981 * 185.84088 * 13 12 2 15 15 C 1.53117 * 109.27960 * 300.82102 * 14 13 12 16 16 H 1.09002 * 109.52553 * 177.56326 * 15 14 13 17 17 O 1.42898 * 109.57533 * 297.71856 * 15 14 13 18 18 C 1.53114 * 109.16173 * 57.65936 * 15 14 13 19 19 H 1.09002 * 109.53978 * 62.30584 * 18 15 14 20 20 O 1.42903 * 109.50402 * 182.40708 * 18 15 14 21 21 C 1.46841 * 111.00301 * 295.00179 * 12 2 1 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46118 * 305.85324 * 13 12 2 27 27 H 1.08997 * 109.46117 * 65.82522 * 13 12 2 28 28 H 1.09008 * 109.50041 * 180.88041 * 14 13 12 29 29 H 1.09005 * 109.53920 * 60.78472 * 14 13 12 30 30 H 0.96700 * 114.00293 * 299.71762 * 17 15 14 31 31 H 0.96700 * 113.99975 * 179.80112 * 20 18 15 32 32 H 1.09005 * 109.46247 * 294.17843 * 21 12 2 33 33 H 1.09000 * 109.46512 * 54.14005 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4710 -0.9050 1.1287 14 6 3.9222 -1.7533 2.3198 15 6 3.5558 -1.0336 3.6207 16 1 3.8364 -1.6540 4.4718 17 8 4.2497 0.2137 3.6897 18 6 2.0458 -0.7813 3.6473 19 1 1.5167 -1.7342 3.6355 20 8 1.7033 -0.0601 4.8325 21 6 1.6489 0.0388 2.4176 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7092 1.1618 -3.4843 26 1 3.7176 -1.4214 0.2010 27 1 3.9808 0.0580 1.1547 28 1 5.0018 -1.8977 2.2755 29 1 3.4238 -2.7221 2.2871 30 1 5.2129 0.1292 3.6773 31 1 0.7603 0.1376 4.9140 32 1 2.1672 0.9975 2.4376 33 1 0.5721 0.2081 2.4261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306650642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -95.094632 kcal Electronic energy + Delta-G solvation = -15483.060595 eV Core-core repulsion = 12929.760822 eV Total energy + Delta-G solvation = -2553.299773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19412 -36.08093 -35.76378 -33.10970 -31.20488 -29.23513 -28.14661 -25.26084 -23.42324 -22.18324 -20.02426 -19.25912 -17.05965 -16.50972 -16.20857 -15.60500 -14.61802 -14.50675 -14.23841 -13.43825 -13.30574 -12.71057 -12.52905 -12.05164 -11.77347 -11.38666 -11.08702 -11.01599 -10.87045 -10.66533 -10.25987 -10.16441 -10.07469 -9.89955 -9.63589 -9.27699 -8.78124 -8.43340 -7.16570 -6.02645 -4.07697 3.29250 3.35723 3.38124 4.30947 4.41127 4.47201 4.99091 5.13199 5.27641 5.31085 5.51997 5.63555 5.73518 6.01278 6.06463 6.13597 6.34522 6.54425 6.69161 6.75614 6.86928 7.06474 7.17602 7.52518 7.69315 7.80842 7.83891 7.93879 8.19065 8.31650 8.59597 8.98659 9.57348 11.04251 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045371 B = 0.008782 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.985493 B = 3187.472395 C = 3567.154412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.064 3.936 14 C -0.149 4.149 15 C 0.115 3.885 16 H 0.051 0.949 17 O -0.553 6.553 18 C 0.115 3.885 19 H 0.070 0.930 20 O -0.564 6.564 21 C 0.027 3.973 22 H 0.006 0.994 23 H 0.085 0.915 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.090 0.910 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.369 0.631 31 H 0.374 0.626 32 H 0.038 0.962 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 -3.708 9.626 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.257 5.257 13 C -0.064 4.064 14 C -0.188 4.188 15 C 0.055 3.945 16 H 0.069 0.931 17 O -0.358 6.358 18 C 0.056 3.944 19 H 0.088 0.912 20 O -0.369 6.369 21 C -0.102 4.102 22 H 0.025 0.975 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.215 0.785 31 H 0.220 0.780 32 H 0.056 0.944 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.122 -3.853 9.621 10.824 hybrid contribution 0.577 0.156 -1.077 1.231 sum 3.699 -3.697 8.544 10.018 Atomic orbital electron populations 1.21811 0.97696 0.99543 0.99799 1.19214 0.92339 0.92112 0.85619 0.98368 1.21189 1.31209 1.12326 0.89831 0.91744 1.24945 0.95189 0.95049 0.99045 1.69896 1.36837 1.22916 1.23435 0.86520 0.79180 0.79291 0.82525 1.20666 1.21319 1.19946 1.62052 1.12010 1.49301 1.02384 1.21924 0.89049 0.98045 0.97430 1.22343 1.00563 1.00370 0.95492 1.21800 0.91281 0.85260 0.96121 0.93143 1.86620 1.22010 1.30114 1.97017 1.21857 0.93414 0.94548 0.84579 0.91207 1.86525 1.29753 1.78480 1.42101 1.22629 1.00551 0.96054 0.90992 0.97478 0.89670 0.94721 0.92954 0.89176 0.95416 0.91507 0.90464 0.78488 0.77980 0.94405 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.88 37.16 0.33 -2.88 16 2 C 0.21 5.45 2.07 -68.87 -0.14 5.31 16 3 H 0.00 -0.04 8.13 -51.93 -0.42 -0.46 16 4 C -0.51 -13.78 7.87 -34.44 -0.27 -14.05 16 5 H 0.06 1.72 6.04 -52.49 -0.32 1.41 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.53 -11.54 4.52 -228.08 -1.03 -12.57 16 13 C 0.06 1.27 5.02 -3.83 -0.02 1.25 16 14 C -0.15 -2.29 5.80 -26.65 -0.15 -2.44 16 15 C 0.11 1.77 3.50 -26.61 -0.09 1.67 16 16 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 17 O -0.55 -8.92 12.04 -46.49 -0.56 -9.48 16 18 C 0.12 1.89 3.41 -26.65 -0.09 1.80 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 20 O -0.56 -8.83 13.18 -46.49 -0.61 -9.44 16 21 C 0.03 0.52 4.78 -3.84 -0.02 0.50 16 22 H 0.01 0.14 6.40 -51.93 -0.33 -0.19 16 23 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.09 1.92 5.74 -51.93 -0.30 1.62 16 27 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 28 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.37 4.20 9.09 45.56 0.41 4.62 16 31 H 0.37 4.23 9.08 45.56 0.41 4.65 16 32 H 0.04 0.82 7.76 -51.93 -0.40 0.42 16 33 H 0.07 1.33 6.18 -51.93 -0.32 1.01 16 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -31.15 259.81 -6.47 -37.62 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.23 Total: 5.97 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.55 Total: -7.32 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.40 Total: -37.41 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.15 -6.47 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306650642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.473 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds