Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46852 * 110.99911 * 170.78909 * 12 2 1 14 14 C 1.53036 * 109.51981 * 185.84088 * 13 12 2 15 15 C 1.53117 * 109.27960 * 300.82102 * 14 13 12 16 16 H 1.09002 * 109.52553 * 177.56326 * 15 14 13 17 17 O 1.42898 * 109.57533 * 297.71856 * 15 14 13 18 18 C 1.53114 * 109.16173 * 57.65936 * 15 14 13 19 19 H 1.09002 * 109.53978 * 62.30584 * 18 15 14 20 20 O 1.42903 * 109.50402 * 182.40708 * 18 15 14 21 21 C 1.46841 * 111.00301 * 295.00179 * 12 2 1 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46118 * 305.85324 * 13 12 2 27 27 H 1.08997 * 109.46117 * 65.82522 * 13 12 2 28 28 H 1.09008 * 109.50041 * 180.88041 * 14 13 12 29 29 H 1.09005 * 109.53920 * 60.78472 * 14 13 12 30 30 H 0.96700 * 114.00293 * 299.71762 * 17 15 14 31 31 H 0.96700 * 113.99975 * 179.80112 * 20 18 15 32 32 H 1.09005 * 109.46247 * 294.17843 * 21 12 2 33 33 H 1.09000 * 109.46512 * 54.14005 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4710 -0.9050 1.1287 14 6 3.9222 -1.7533 2.3198 15 6 3.5558 -1.0336 3.6207 16 1 3.8364 -1.6540 4.4718 17 8 4.2497 0.2137 3.6897 18 6 2.0458 -0.7813 3.6473 19 1 1.5167 -1.7342 3.6355 20 8 1.7033 -0.0601 4.8325 21 6 1.6489 0.0388 2.4176 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7092 1.1618 -3.4843 26 1 3.7176 -1.4214 0.2010 27 1 3.9808 0.0580 1.1547 28 1 5.0018 -1.8977 2.2755 29 1 3.4238 -2.7221 2.2871 30 1 5.2129 0.1292 3.6773 31 1 0.7603 0.1376 4.9140 32 1 2.1672 0.9975 2.4376 33 1 0.5721 0.2081 2.4261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306650642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -121.645981 kcal Electronic energy + Delta-G solvation = -15484.211948 eV Core-core repulsion = 12929.760822 eV Total energy + Delta-G solvation = -2554.451126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60542 -37.68819 -36.98258 -34.97120 -32.86780 -30.75192 -29.86221 -27.27199 -25.00975 -23.65130 -21.79300 -20.75088 -18.55850 -18.06002 -17.80287 -17.15414 -16.35713 -15.84744 -15.81165 -15.13618 -14.94917 -14.34152 -14.08742 -13.66149 -13.24756 -13.00487 -12.93672 -12.59356 -12.53428 -12.40528 -12.08378 -12.03092 -11.90600 -11.27982 -11.04217 -10.84732 -10.56260 -10.50106 -8.98717 -8.12717 -6.25315 1.42528 1.43123 1.53266 2.41099 3.05353 3.17055 3.31806 3.54345 3.85890 4.01491 4.17748 4.27510 4.41700 4.59275 4.73551 4.74937 4.86898 4.93047 5.00116 5.03684 5.15529 5.25176 5.30108 5.51663 5.70103 5.77673 6.21561 6.35657 6.65807 6.84829 6.89931 6.95809 7.44042 8.93869 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045371 B = 0.008782 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.985493 B = 3187.472395 C = 3567.154412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.047 1.047 4 C -0.521 4.521 5 H 0.067 0.933 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.529 5.529 13 C 0.062 3.938 14 C -0.137 4.137 15 C 0.112 3.888 16 H 0.080 0.920 17 O -0.577 6.577 18 C 0.119 3.881 19 H 0.087 0.913 20 O -0.572 6.572 21 C 0.030 3.970 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.036 0.964 25 H 0.261 0.739 26 H 0.072 0.928 27 H 0.006 0.994 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.388 0.612 31 H 0.391 0.609 32 H 0.008 0.992 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -5.419 10.541 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.030 1.030 4 C -0.559 4.559 5 H 0.085 0.915 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.255 5.255 13 C -0.066 4.066 14 C -0.175 4.175 15 C 0.054 3.946 16 H 0.098 0.902 17 O -0.385 6.385 18 C 0.060 3.940 19 H 0.105 0.895 20 O -0.379 6.379 21 C -0.099 4.099 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.237 0.763 31 H 0.241 0.759 32 H 0.026 0.974 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.850 -5.572 10.563 12.548 hybrid contribution 0.350 0.757 -1.312 1.554 sum 4.200 -4.816 9.251 11.243 Atomic orbital electron populations 1.21621 0.97095 0.99425 0.99528 1.19040 0.92860 0.89890 0.87371 1.02998 1.21478 1.31294 1.12441 0.90722 0.91538 1.25785 0.95340 0.95742 1.02138 1.70038 1.37822 1.24234 1.24093 0.85473 0.78973 0.78139 0.78553 1.19982 1.21188 1.18975 1.62039 1.13286 1.48434 1.01756 1.21947 0.87720 0.97725 0.99173 1.22282 1.02554 0.99509 0.93114 1.21890 0.90502 0.85341 0.96910 0.90228 1.86581 1.23941 1.30907 1.97057 1.21841 0.94720 0.94390 0.83031 0.89532 1.86497 1.31686 1.78468 1.41227 1.22669 1.00251 0.95287 0.91644 0.95500 0.92200 0.94509 0.92944 0.90983 0.97541 0.88382 0.89419 0.76253 0.75940 0.97360 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.88 71.98 0.64 -5.29 16 2 C 0.22 11.32 2.07 44.17 0.09 11.41 16 3 H -0.05 -2.87 8.13 -2.39 -0.02 -2.89 16 4 C -0.52 -28.73 7.87 25.60 0.20 -28.53 16 5 H 0.07 3.57 6.04 -2.91 -0.02 3.55 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.59 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.53 -23.01 4.52 -875.51 -3.95 -26.96 16 13 C 0.06 2.46 5.02 86.32 0.43 2.89 16 14 C -0.14 -3.80 5.80 30.65 0.18 -3.62 16 15 C 0.11 3.12 3.50 30.67 0.11 3.23 16 16 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 17 O -0.58 -17.49 12.04 -138.22 -1.66 -19.15 16 18 C 0.12 3.65 3.41 30.65 0.10 3.75 16 19 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 20 O -0.57 -16.49 13.18 -138.22 -1.82 -18.31 16 21 C 0.03 1.17 4.78 86.33 0.41 1.58 16 22 H 0.03 1.18 6.40 -2.39 -0.02 1.17 16 23 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.07 3.06 5.74 -2.39 -0.01 3.05 16 27 H 0.01 0.27 7.76 -2.39 -0.02 0.25 16 28 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.39 7.93 9.09 -74.06 -0.67 7.26 16 31 H 0.39 7.95 9.08 -74.06 -0.67 7.28 16 32 H 0.01 0.36 7.76 -2.38 -0.02 0.34 16 33 H 0.07 2.66 6.18 -2.39 -0.01 2.65 16 Total: -1.00 -67.59 259.81 -2.78 -70.37 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.22 Total: 15.78 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 2.62 Total: -13.65 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.71 Total: -80.55 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -3.49 Total: -37.46 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.59 -2.78 -70.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306650642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.275 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds