Wall clock time and date at job start Mon Mar 30 2020 03:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46908 * 2 1 4 4 C 1.50695 * 109.47001 * 119.99991 * 2 1 3 5 5 H 1.07996 * 119.99866 * 114.33227 * 4 2 1 6 6 C 1.37876 * 120.00157 * 294.32519 * 4 2 1 7 7 N 1.31516 * 120.00269 * 158.51980 * 6 4 2 8 8 Si 1.86802 * 120.00064 * 338.52549 * 6 4 2 9 9 H 1.48499 * 109.47125 * 269.99619 * 8 6 4 10 10 H 1.48505 * 109.46903 * 29.99600 * 8 6 4 11 11 H 1.48500 * 109.47568 * 149.99595 * 8 6 4 12 12 N 1.46895 * 109.47104 * 240.00157 * 2 1 3 13 13 C 1.46841 * 111.00067 * 295.78804 * 12 2 1 14 14 C 1.53044 * 109.52651 * 185.84137 * 13 12 2 15 15 C 1.53121 * 109.27556 * 300.82207 * 14 13 12 16 16 H 1.09000 * 109.52154 * 177.55467 * 15 14 13 17 17 O 1.42899 * 109.57425 * 297.71558 * 15 14 13 18 18 C 1.53119 * 109.16166 * 57.65145 * 15 14 13 19 19 H 1.09000 * 109.50084 * 62.28639 * 18 15 14 20 20 O 1.42902 * 109.53467 * 182.38411 * 18 15 14 21 21 C 1.46850 * 111.00362 * 60.00110 * 12 2 1 22 22 H 1.08994 * 109.47265 * 293.89737 * 1 2 3 23 23 H 1.09002 * 109.47128 * 53.90488 * 1 2 3 24 24 H 1.09001 * 109.47164 * 173.89764 * 1 2 3 25 25 H 0.97004 * 119.99369 * 354.93222 * 7 6 4 26 26 H 1.09002 * 109.46650 * 305.85826 * 13 12 2 27 27 H 1.08997 * 109.46777 * 65.82682 * 13 12 2 28 28 H 1.09000 * 109.50746 * 180.88104 * 14 13 12 29 29 H 1.08995 * 109.50113 * 60.75879 * 14 13 12 30 30 H 0.96704 * 113.99894 * 299.71180 * 17 15 14 31 31 H 0.96695 * 113.99845 * 179.82810 * 20 18 15 32 32 H 1.09003 * 109.45886 * 294.17478 * 21 12 2 33 33 H 1.08997 * 109.46394 * 54.13745 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5756 -1.6387 1.1340 6 6 1.7984 -0.1751 2.4793 7 7 1.8402 -0.9464 3.5438 8 14 1.4218 1.6457 2.6595 9 1 2.6888 2.3969 2.8482 10 1 0.7351 2.1326 1.4361 11 1 0.5421 1.8551 3.8375 12 7 2.0197 -0.6924 -1.1994 13 6 1.6328 -2.1089 -1.1841 14 6 2.2801 -2.8288 -2.3694 15 6 1.8216 -2.1692 -3.6730 16 1 2.3141 -2.6509 -4.5178 17 8 0.4052 -2.3041 -3.8055 18 6 2.1936 -0.6842 -3.6428 19 1 3.2771 -0.5816 -3.5821 20 8 1.7201 -0.0487 -4.8320 21 6 1.5489 -0.0266 -2.4207 22 1 -0.3633 0.4163 0.9395 23 1 -0.3633 0.6054 -0.8304 24 1 -0.3633 -1.0218 -0.1092 25 1 1.9625 -1.9035 3.4445 26 1 1.9683 -2.5671 -0.2537 27 1 0.5484 -2.1901 -1.2582 28 1 1.9802 -3.8767 -2.3667 29 1 3.3649 -2.7599 -2.2887 30 1 0.0981 -3.2207 -3.8315 31 1 1.9191 0.8964 -4.8787 32 1 0.4648 -0.1174 -2.4889 33 1 1.8234 1.0278 -2.3883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306650643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:42 Heat of formation + Delta-G solvation = -123.116180 kcal Electronic energy + Delta-G solvation = -15606.945019 eV Core-core repulsion = 13052.430140 eV Total energy + Delta-G solvation = -2554.514879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76691 -37.90307 -36.99585 -34.94494 -33.13709 -30.95243 -29.81305 -26.97267 -24.98174 -24.07654 -21.79369 -20.56562 -19.38962 -18.15039 -17.85412 -16.86394 -16.28428 -16.04978 -15.88295 -15.24010 -14.87936 -14.55616 -14.03693 -13.84693 -13.41791 -13.18939 -13.15483 -12.81480 -12.51181 -12.32813 -12.26605 -11.85394 -11.55387 -11.25666 -11.10485 -11.05522 -10.67235 -10.28927 -8.99387 -8.72518 -6.29321 1.48394 1.52539 1.70878 2.50847 2.99503 3.05849 3.27243 3.48993 3.81304 3.96639 4.12582 4.22401 4.34438 4.47215 4.56681 4.58885 4.68772 4.73321 4.85378 4.89180 5.01853 5.08002 5.17111 5.26432 5.49382 5.79484 6.08283 6.26583 6.54697 6.73854 6.83140 6.91892 7.43803 8.65263 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045584 B = 0.009359 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.101315 B = 2991.094712 C = 3287.961785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.187 3.813 3 H 0.035 0.965 4 C -0.591 4.591 5 H 0.032 0.968 6 C -0.015 4.015 7 N -0.935 5.935 8 Si 1.080 2.920 9 H -0.272 1.272 10 H -0.249 1.249 11 H -0.289 1.289 12 N -0.529 5.529 13 C 0.067 3.933 14 C -0.139 4.139 15 C 0.115 3.885 16 H 0.077 0.923 17 O -0.574 6.574 18 C 0.118 3.882 19 H 0.083 0.917 20 O -0.570 6.570 21 C 0.026 3.974 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.254 0.746 26 H 0.052 0.948 27 H 0.022 0.978 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.388 0.612 31 H 0.392 0.608 32 H 0.029 0.971 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 0.272 -15.004 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.079 3.921 3 H 0.053 0.947 4 C -0.629 4.629 5 H 0.050 0.950 6 C -0.214 4.214 7 N -0.571 5.571 8 Si 0.901 3.099 9 H -0.198 1.198 10 H -0.173 1.173 11 H -0.215 1.215 12 N -0.254 5.254 13 C -0.061 4.061 14 C -0.177 4.177 15 C 0.056 3.944 16 H 0.095 0.905 17 O -0.381 6.381 18 C 0.059 3.941 19 H 0.100 0.900 20 O -0.377 6.377 21 C -0.102 4.102 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.242 0.758 32 H 0.047 0.953 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.266 1.519 -14.045 14.130 hybrid contribution -0.349 -1.677 -0.305 1.740 sum -0.615 -0.157 -14.351 14.365 Atomic orbital electron populations 1.22565 1.00285 0.99821 0.99799 1.19526 0.89797 0.94547 0.88242 0.94694 1.22094 1.38930 1.09626 0.92220 0.94967 1.26987 0.93345 1.09114 0.91966 1.70949 1.47571 1.05917 1.32626 0.83596 0.77844 0.71611 0.76807 1.19790 1.17315 1.21469 1.62087 1.59414 1.02394 1.01539 1.21844 0.96934 0.89154 0.98178 1.22279 1.01973 0.99826 0.93665 1.21826 0.82002 0.94307 0.96231 0.90491 1.86562 1.21922 1.33068 1.96548 1.21799 0.97367 0.91542 0.83392 0.89965 1.86506 1.83139 1.28228 1.39854 1.22710 0.97996 0.98689 0.90848 0.93918 0.93604 0.94488 0.93741 0.92931 0.96032 0.88810 0.90112 0.76272 0.75806 0.95250 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.34 7.90 71.98 0.57 -6.77 16 2 C 0.19 8.84 1.96 44.17 0.09 8.93 16 3 H 0.04 1.65 6.54 -2.39 -0.02 1.64 16 4 C -0.59 -33.12 8.22 25.60 0.21 -32.91 16 5 H 0.03 1.98 6.42 -2.91 -0.02 1.96 16 6 C -0.02 -0.87 5.23 84.65 0.44 -0.43 16 7 N -0.94 -58.15 13.70 21.45 0.29 -57.85 16 8 Si 1.08 49.90 26.36 68.60 1.81 51.71 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.25 -10.31 5.94 99.48 0.59 -9.72 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 N -0.53 -21.75 4.67 -875.53 -4.09 -25.84 16 13 C 0.07 2.61 4.63 86.33 0.40 3.01 16 14 C -0.14 -3.95 5.80 30.65 0.18 -3.78 16 15 C 0.12 3.09 3.50 30.67 0.11 3.19 16 16 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 17 O -0.57 -16.24 12.04 -138.27 -1.67 -17.91 16 18 C 0.12 3.36 3.41 30.64 0.10 3.47 16 19 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 20 O -0.57 -15.02 13.18 -138.27 -1.82 -16.84 16 21 C 0.03 0.90 4.38 86.32 0.38 1.28 16 22 H 0.04 1.93 5.71 -2.39 -0.01 1.91 16 23 H 0.05 1.80 6.88 -2.39 -0.02 1.79 16 24 H 0.04 1.66 6.35 -2.39 -0.02 1.65 16 25 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 26 H 0.05 2.40 5.93 -2.39 -0.01 2.39 16 27 H 0.02 0.88 6.20 -2.39 -0.01 0.86 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.39 7.44 9.09 -74.05 -0.67 6.77 16 31 H 0.39 6.85 9.08 -74.06 -0.67 6.18 16 32 H 0.03 1.11 6.39 -2.39 -0.02 1.09 16 33 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -68.99 253.13 -3.37 -72.36 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.37 Total: 18.39 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 2.48 Total: -24.02 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -3.80 Total: -83.70 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -3.49 Total: -34.75 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.81 Total: 51.71 kcal Total: -68.99 -3.37 -72.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306650643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.754 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds