Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47448 * 2 1 4 4 N 1.46509 * 109.46802 * 120.00042 * 2 1 3 5 5 C 1.36938 * 120.00068 * 113.93138 * 4 2 1 6 6 H 1.07991 * 119.99985 * 155.93886 * 5 4 2 7 7 C 1.38814 * 119.99508 * 335.94072 * 5 4 2 8 8 N 1.31625 * 119.99727 * 141.69817 * 7 5 4 9 9 Si 1.86794 * 120.00517 * 321.69182 * 7 5 4 10 10 H 1.48499 * 109.47089 * 87.10780 * 9 7 5 11 11 H 1.48506 * 109.46884 * 327.11564 * 9 7 5 12 12 H 1.48491 * 109.47444 * 207.11374 * 9 7 5 13 13 C 1.46499 * 119.99804 * 293.92868 * 4 2 1 14 14 H 1.08995 * 110.45896 * 357.39360 * 13 4 2 15 15 C 1.54487 * 110.50947 * 234.64223 * 13 4 2 16 16 O 1.44421 * 104.80261 * 217.37545 * 15 13 4 17 17 C 1.44423 * 105.27507 * 40.51343 * 16 15 13 18 18 C 1.54480 * 104.80453 * 319.48698 * 17 16 15 19 19 H 1.08997 * 110.51058 * 265.33218 * 18 17 16 20 20 O 1.42906 * 110.51030 * 142.62257 * 18 17 16 21 21 H 1.09003 * 109.46764 * 300.00152 * 1 2 3 22 22 H 1.08999 * 109.47149 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.47547 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47027 * 239.99567 * 2 1 3 25 25 H 1.08999 * 109.47444 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47098 * 300.00218 * 3 2 1 27 27 H 1.09003 * 109.46770 * 59.99964 * 3 2 1 28 28 H 0.96995 * 119.99762 * 179.97438 * 8 7 5 29 29 H 1.08995 * 110.37292 * 336.21274 * 15 13 4 30 30 H 1.09001 * 110.36802 * 98.54991 * 15 13 4 31 31 H 1.09000 * 110.37528 * 200.65045 * 17 16 15 32 32 H 1.09004 * 110.46548 * 78.36070 * 17 16 15 33 33 H 0.96694 * 113.99862 * 65.36106 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1963 5 6 2.7000 -1.8720 1.0745 6 1 3.3806 -2.1853 1.8522 7 6 2.5162 -2.6667 -0.0487 8 7 3.5396 -3.3007 -0.5809 9 14 0.8166 -2.8367 -0.8048 10 1 0.5952 -1.7365 -1.7773 11 1 -0.2106 -2.7654 0.2654 12 1 0.7139 -4.1430 -1.5033 13 6 1.7772 -0.1174 2.5227 14 1 1.2650 0.8408 2.4362 15 6 3.1069 0.0437 3.2925 16 8 2.7813 -0.2769 4.6625 17 6 1.8856 -1.4073 4.5862 18 6 0.9553 -1.0940 3.3933 19 1 0.0379 -0.6178 3.7393 20 8 0.6578 -2.2862 2.6638 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.4111 -3.8563 -1.3655 29 1 3.8545 -0.6498 2.9078 30 1 3.4663 1.0701 3.2182 31 1 1.3070 -1.4958 5.5056 32 1 2.4445 -2.3246 4.4006 33 1 0.1430 -2.9347 3.1632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306658066.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -71.902536 kcal Electronic energy + Delta-G solvation = -16181.336097 eV Core-core repulsion = 13629.042008 eV Total energy + Delta-G solvation = -2552.294089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72226 -37.97766 -36.70951 -34.04461 -32.71119 -30.08205 -29.17562 -27.99362 -25.59427 -23.61587 -22.40757 -20.93901 -18.54208 -18.30500 -17.43766 -16.84161 -16.14194 -15.95390 -15.73198 -15.10364 -14.98725 -14.50936 -14.10165 -13.78292 -13.48307 -13.04524 -12.96429 -12.67364 -12.57941 -12.29654 -12.21252 -11.86294 -11.50602 -11.31675 -11.18388 -10.86059 -10.49504 -10.28629 -8.83050 -8.05473 -5.13298 1.42432 1.53323 1.69453 2.61359 2.83236 3.16705 3.49728 3.77430 3.86089 3.99986 4.15701 4.26542 4.42145 4.49804 4.57401 4.62887 4.82363 4.85726 4.88301 4.95038 4.98330 5.00825 5.08830 5.20916 5.42306 5.56966 5.81864 6.02020 6.24633 7.06551 7.21130 7.84546 8.18354 9.13166 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.028790 B = 0.015409 C = 0.013627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.312328 B = 1816.653584 C = 2054.221477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.145 3.855 3 C -0.148 4.148 4 N -0.577 5.577 5 C -0.191 4.191 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.946 5.946 9 Si 0.915 3.085 10 H -0.284 1.284 11 H -0.250 1.250 12 H -0.340 1.340 13 C 0.140 3.860 14 H 0.102 0.898 15 C 0.035 3.965 16 O -0.389 6.389 17 C 0.020 3.980 18 C 0.054 3.946 19 H 0.081 0.919 20 O -0.535 6.535 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.253 0.747 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 8.513 7.114 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.039 3.961 3 C -0.206 4.206 4 N -0.297 5.297 5 C -0.320 4.320 6 H 0.065 0.935 7 C -0.220 4.220 8 N -0.592 5.592 9 Si 0.748 3.252 10 H -0.212 1.212 11 H -0.176 1.176 12 H -0.272 1.272 13 C 0.032 3.968 14 H 0.119 0.881 15 C -0.043 4.043 16 O -0.308 6.308 17 C -0.057 4.057 18 C -0.008 4.008 19 H 0.099 0.901 20 O -0.338 6.338 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.063 0.937 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.310 8.865 6.748 13.325 hybrid contribution -0.899 -1.339 -0.360 1.653 sum -8.209 7.526 6.388 12.838 Atomic orbital electron populations 1.22575 0.97372 1.01109 1.01951 1.20735 0.92759 0.93459 0.89101 1.22127 1.00808 0.95386 1.02285 1.44198 1.64223 1.21437 0.99880 1.18255 1.13162 0.97055 1.03549 0.93499 1.25464 0.98846 0.99027 0.98622 1.70230 1.30497 1.36063 1.22457 0.86604 0.87099 0.73752 0.77727 1.21166 1.17585 1.27161 1.22010 0.93674 0.95907 0.85190 0.88050 1.23897 0.98227 1.01220 0.80964 1.89006 1.66417 1.49385 1.25990 1.24181 0.91936 0.89402 1.00208 1.23656 0.97343 0.88270 0.91509 0.90102 1.87106 1.76320 1.28768 1.41636 0.91386 0.91779 0.94471 0.93664 0.93629 0.91281 0.91366 0.93865 0.94055 0.87831 0.86759 0.93724 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.19 8.12 71.98 0.58 -5.60 16 2 C 0.15 5.93 2.25 44.99 0.10 6.03 16 3 C -0.15 -4.71 9.09 71.98 0.65 -4.06 16 4 N -0.58 -25.36 1.85 -648.66 -1.20 -26.56 16 5 C -0.19 -10.36 7.15 84.03 0.60 -9.76 16 6 H 0.05 2.84 6.78 -2.92 -0.02 2.82 16 7 C -0.03 -1.48 4.77 84.86 0.40 -1.07 16 8 N -0.95 -60.08 13.97 21.65 0.30 -59.77 16 9 Si 0.92 47.17 22.75 68.60 1.56 48.73 16 10 H -0.28 -13.97 6.09 99.48 0.61 -13.37 16 11 H -0.25 -12.28 5.89 99.48 0.59 -11.69 16 12 H -0.34 -18.67 7.11 99.48 0.71 -17.96 16 13 C 0.14 5.01 2.75 46.01 0.13 5.14 16 14 H 0.10 3.08 6.20 -2.39 -0.01 3.07 16 15 C 0.04 1.27 7.20 72.49 0.52 1.79 16 16 O -0.39 -13.49 11.65 -148.98 -1.74 -15.22 16 17 C 0.02 0.62 7.38 72.49 0.53 1.15 16 18 C 0.05 1.75 4.38 31.61 0.14 1.89 16 19 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 20 O -0.53 -20.30 9.81 -148.98 -1.46 -21.76 16 21 H 0.07 2.11 7.52 -2.39 -0.02 2.10 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.04 1.53 3.83 -2.39 -0.01 1.52 16 24 H 0.05 2.19 5.12 -2.39 -0.01 2.18 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 1.85 6.70 -2.39 -0.02 1.84 16 28 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.04 1.80 6.27 -2.39 -0.01 1.79 16 30 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.37 10.49 9.12 -74.06 -0.68 9.81 16 Total: -1.00 -68.60 248.99 1.35 -67.26 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.21 Total: 11.84 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.67 Total: -4.50 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -0.90 Total: -86.34 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -3.20 Total: -36.98 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.56 Total: 48.73 kcal Total: -68.60 1.35 -67.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306658066.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds