Wall clock time and date at job start Mon Mar 30 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 N 1.46501 * 109.47115 * 119.99885 * 2 1 3 5 5 C 1.36941 * 119.99824 * 306.05244 * 4 2 1 6 6 H 1.08003 * 119.99629 * 125.55400 * 5 4 2 7 7 C 1.38809 * 119.99890 * 305.55778 * 5 4 2 8 8 N 1.31621 * 119.99821 * 323.19850 * 7 5 4 9 9 Si 1.86803 * 120.00047 * 143.20593 * 7 5 4 10 10 H 1.48502 * 109.46952 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47251 * 119.99501 * 9 7 5 12 12 H 1.48498 * 109.47137 * 239.99784 * 9 7 5 13 13 C 1.46498 * 120.00322 * 126.05491 * 4 2 1 14 14 H 1.09000 * 110.53929 * 1.16402 * 13 4 2 15 15 C 1.54098 * 110.48692 * 238.54849 * 13 4 2 16 16 O 1.43742 * 107.42027 * 243.27533 * 15 13 4 17 17 C 1.44578 * 106.87054 * 333.67381 * 16 15 13 18 18 C 1.54809 * 110.49169 * 123.78112 * 13 4 2 19 19 H 1.09001 * 110.90685 * 21.31833 * 18 13 4 20 20 O 1.42899 * 110.90551 * 257.75767 * 18 13 4 21 21 H 1.08994 * 109.47051 * 295.78143 * 1 2 3 22 22 H 1.09008 * 109.46731 * 55.78236 * 1 2 3 23 23 H 1.08999 * 109.47302 * 175.78181 * 1 2 3 24 24 H 1.09000 * 109.47080 * 239.99456 * 2 1 3 25 25 H 1.08999 * 109.47279 * 172.15083 * 3 2 1 26 26 H 1.09002 * 109.46791 * 292.14965 * 3 2 1 27 27 H 1.09001 * 109.47406 * 52.14367 * 3 2 1 28 28 H 0.97002 * 119.99440 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.88292 * 2.77599 * 15 13 4 30 30 H 1.09001 * 109.88301 * 123.77723 * 15 13 4 31 31 H 1.09001 * 110.50280 * 281.37867 * 17 16 15 32 32 H 1.09000 * 110.77777 * 158.51335 * 17 16 15 33 33 H 0.96704 * 114.00187 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5885 -0.2993 2.4361 6 1 1.1469 -1.0212 3.1072 7 6 1.7204 1.0251 2.8304 8 7 2.7809 1.7164 2.4702 9 14 0.3928 1.8261 3.8722 10 1 -0.6874 0.8426 4.1394 11 1 0.9795 2.2794 5.1589 12 1 -0.1694 2.9931 3.1461 13 6 2.9665 -1.7997 1.0660 14 1 3.2184 -1.9665 0.0187 15 6 2.3854 -3.0824 1.6919 16 8 3.2350 -3.4473 2.7924 17 6 4.5466 -2.9109 2.5057 18 6 4.2450 -1.5197 1.8928 19 1 4.0501 -0.7841 2.6733 20 8 5.3151 -1.0917 1.0479 21 1 -0.3633 0.4469 0.9253 22 1 -0.3633 0.5779 -0.8499 23 1 -0.3634 -1.0249 -0.0756 24 1 1.8933 -0.5139 -0.8899 25 1 3.1210 1.4456 0.1403 26 1 1.7959 1.9141 -0.9519 27 1 1.5667 1.9953 0.8114 28 1 2.8732 2.6418 2.7461 29 1 1.3737 -2.8940 2.0513 30 1 2.3726 -3.8829 0.9522 31 1 5.0684 -3.5422 1.7864 32 1 5.1311 -2.8090 3.4201 33 1 6.1378 -0.9035 1.5200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306658078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:34 Heat of formation + Delta-G solvation = -63.146469 kcal Electronic energy + Delta-G solvation = -15971.689600 eV Core-core repulsion = 13419.775203 eV Total energy + Delta-G solvation = -2551.914397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.88645 -36.05875 -35.29511 -31.72980 -31.18086 -28.09794 -27.19540 -25.83809 -24.01588 -21.84016 -19.89374 -19.68697 -16.86847 -16.16744 -15.75990 -14.74145 -14.50192 -14.26684 -13.94532 -13.29172 -12.92981 -12.47920 -12.17396 -11.89125 -11.86203 -11.23000 -11.13454 -10.84958 -10.70311 -10.62032 -10.44231 -10.08789 -9.80040 -9.68985 -9.55278 -9.34058 -8.82841 -7.91147 -6.50483 -5.78492 -3.50983 3.29775 3.42239 3.47686 4.42389 4.51481 5.01127 5.11506 5.50288 5.57247 5.69688 5.88024 6.06814 6.17659 6.21053 6.40106 6.47926 6.51444 6.56285 6.69176 6.78785 6.96273 7.09683 7.13467 7.20135 7.53189 7.55693 7.83642 7.97455 8.38595 8.64204 9.18087 9.71486 10.48055 10.99827 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.013402 C = 0.012466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.214006 B = 2088.753570 C = 2245.626772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 C -0.144 4.144 4 N -0.567 5.567 5 C -0.294 4.294 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.836 5.836 9 Si 0.863 3.137 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.149 3.851 14 H 0.065 0.935 15 C 0.039 3.961 16 O -0.378 6.378 17 C 0.014 3.986 18 C 0.063 3.937 19 H 0.104 0.896 20 O -0.559 6.559 21 H 0.061 0.939 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.004 0.996 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -4.132 -2.541 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 C -0.203 4.203 4 N -0.288 5.288 5 C -0.423 4.423 6 H 0.072 0.928 7 C -0.152 4.152 8 N -0.472 5.472 9 Si 0.690 3.310 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.040 4.040 16 O -0.296 6.296 17 C -0.064 4.064 18 C 0.002 3.998 19 H 0.122 0.878 20 O -0.362 6.362 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.023 0.977 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.124 -4.152 -2.823 5.145 hybrid contribution -0.092 0.808 0.847 1.174 sum 1.032 -3.344 -1.976 4.019 Atomic orbital electron populations 1.22038 0.98194 0.99760 1.00541 1.20386 0.91696 0.92758 0.87823 1.22409 1.02797 0.97458 0.97620 1.43862 1.46903 1.35690 1.02319 1.18481 1.36998 0.92929 0.93873 0.92782 1.25340 0.94906 0.99471 0.95449 1.70482 1.23043 1.09663 1.43987 0.86950 0.84216 0.79699 0.80100 1.19517 1.21613 1.21105 1.21636 0.88090 0.89506 0.96655 0.91723 1.23666 0.96081 0.95685 0.88537 1.88834 1.20239 1.76883 1.43693 1.24177 0.86407 0.95876 0.99957 1.24089 0.87569 0.93676 0.94466 0.87780 1.86465 1.22786 1.89439 1.37559 0.92017 0.94815 0.94236 0.94573 0.91922 0.97672 0.91304 0.93583 0.89004 0.94165 0.93091 0.90248 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.14 37.16 0.34 -2.64 16 2 C 0.18 4.01 3.36 -67.93 -0.23 3.78 16 3 C -0.14 -3.36 7.67 37.16 0.29 -3.08 16 4 N -0.57 -13.47 2.34 -156.43 -0.37 -13.83 16 5 C -0.29 -7.59 6.07 -15.06 -0.09 -7.68 16 6 H 0.05 1.48 7.42 -52.48 -0.39 1.09 16 7 C 0.05 1.42 3.58 -17.43 -0.06 1.36 16 8 N -0.84 -22.28 10.50 55.49 0.58 -21.70 16 9 Si 0.86 20.38 29.68 -169.99 -5.04 15.34 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.15 3.26 3.36 -66.40 -0.22 3.03 16 14 H 0.06 1.39 7.57 -51.93 -0.39 0.99 16 15 C 0.04 0.78 7.13 37.73 0.27 1.05 16 16 O -0.38 -7.87 11.54 -35.23 -0.41 -8.27 16 17 C 0.01 0.25 7.45 38.21 0.28 0.54 16 18 C 0.06 1.33 4.08 -24.73 -0.10 1.23 16 19 H 0.10 2.59 7.06 -51.93 -0.37 2.23 16 20 O -0.56 -11.09 13.42 -35.23 -0.47 -11.56 16 21 H 0.06 1.36 7.37 -51.93 -0.38 0.98 16 22 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 25 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.07 1.74 5.34 -51.93 -0.28 1.46 16 28 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.09 1.96 7.03 -51.93 -0.37 1.60 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.36 5.53 9.12 45.56 0.42 5.95 16 LS Contribution 263.84 15.07 3.98 3.98 Total: -1.00 -27.95 263.84 -5.47 -33.42 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.22 Total: 5.05 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 0.47 Total: -2.41 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.22 Total: -35.53 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.88 Total: -19.84 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.04 Total: 15.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.95 -5.47 -33.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306658078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.723 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds