Wall clock time and date at job start Mon Mar 30 2020 03:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.50698 * 109.46946 * 120.00085 * 2 1 3 5 5 H 1.08005 * 119.99942 * 116.45996 * 4 2 1 6 6 C 1.37878 * 120.00199 * 296.46081 * 4 2 1 7 7 N 1.31516 * 119.99531 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47279 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47164 * 299.99579 * 8 6 4 11 11 H 1.48496 * 109.47489 * 59.99811 * 8 6 4 12 12 N 1.46903 * 109.46815 * 240.00013 * 2 1 3 13 13 C 1.47904 * 110.99798 * 299.93399 * 12 2 1 14 14 C 1.53998 * 107.05333 * 214.15790 * 13 12 2 15 15 H 1.08995 * 110.30763 * 242.30686 * 14 13 12 16 16 O 1.42903 * 110.30811 * 120.14260 * 14 13 12 17 17 C 1.54597 * 105.14130 * 1.22151 * 14 13 12 18 18 C 1.48525 * 110.99769 * 182.53508 * 12 2 1 19 19 H 1.09005 * 110.67057 * 41.28570 * 18 12 2 20 20 C 1.52998 * 110.66786 * 278.15171 * 18 12 2 21 21 O 1.42896 * 109.47418 * 295.00382 * 20 18 12 22 22 H 1.09002 * 109.46756 * 300.00453 * 1 2 3 23 23 H 1.09005 * 109.47125 * 59.99625 * 1 2 3 24 24 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 25 25 H 0.96998 * 119.99592 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.91620 * 333.50309 * 13 12 2 27 27 H 1.08990 * 109.92004 * 94.80526 * 13 12 2 28 28 H 0.96697 * 114.00147 * 61.44997 * 16 14 13 29 29 H 1.09001 * 110.71898 * 140.31497 * 17 14 13 30 30 H 1.09000 * 110.72418 * 263.42195 * 17 14 13 31 31 H 1.09005 * 109.46807 * 55.00479 * 20 18 12 32 32 H 1.09008 * 109.46911 * 174.99749 * 20 18 12 33 33 H 0.96702 * 113.99629 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6053 -1.6207 1.1324 6 6 1.7605 -0.1984 2.4814 7 7 1.0624 0.9098 2.6008 8 14 2.3837 -1.0786 4.0065 9 1 1.9610 -0.3302 5.2176 10 1 1.8199 -2.4516 4.0507 11 1 3.8662 -1.1534 3.9639 12 7 2.0197 -0.6925 -1.1995 13 6 1.5467 -2.0935 -1.2328 14 6 2.6621 -2.9314 -1.8849 15 1 2.3035 -3.3849 -2.8089 16 8 3.1181 -3.9396 -0.9807 17 6 3.7981 -1.9269 -2.1860 18 6 3.5031 -0.7657 -1.2035 19 1 3.8796 -0.9993 -0.2076 20 6 4.1069 0.5428 -1.7174 21 8 3.7472 0.7276 -3.0880 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.8715 1.2702 3.4809 26 1 1.3615 -2.4471 -0.2185 27 1 0.6348 -2.1636 -1.8257 28 1 2.4354 -4.5735 -0.7216 29 1 4.7712 -2.3713 -1.9769 30 1 3.7461 -1.5842 -3.2194 31 1 3.7258 1.3756 -1.1263 32 1 5.1926 0.5014 -1.6291 33 1 4.0969 1.5392 -3.4804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306752565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:47 Heat of formation + Delta-G solvation = -94.126621 kcal Electronic energy + Delta-G solvation = -15673.709648 eV Core-core repulsion = 13120.451851 eV Total energy + Delta-G solvation = -2553.257797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95031 -36.17556 -35.35182 -33.06445 -30.86549 -28.92015 -27.23078 -25.13994 -24.36487 -21.39820 -19.65244 -19.05600 -17.27181 -16.73892 -16.04359 -15.30452 -14.49327 -14.20063 -13.81903 -13.35001 -12.89610 -12.70806 -12.49013 -12.08734 -11.51129 -11.20677 -11.01182 -10.86088 -10.66057 -10.52122 -10.15232 -10.07018 -9.89886 -9.80244 -9.40568 -9.34212 -9.14084 -8.39334 -7.16209 -6.00109 -4.11738 3.28558 3.33408 3.37071 4.40114 4.65038 4.87467 5.09424 5.25686 5.30559 5.45681 5.64423 5.91270 6.00622 6.15168 6.24838 6.44671 6.49064 6.59862 6.80395 6.86529 6.95421 7.04118 7.16955 7.54424 7.68804 7.94392 8.06320 8.10885 8.18665 8.26777 8.42293 8.99560 9.55397 11.01153 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.011958 C = 0.010480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.422087 B = 2340.919653 C = 2671.084281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.196 3.804 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.501 5.501 13 C 0.010 3.990 14 C 0.090 3.910 15 H 0.052 0.948 16 O -0.568 6.568 17 C -0.108 4.108 18 C 0.069 3.931 19 H 0.083 0.917 20 C 0.095 3.905 21 O -0.561 6.561 22 H 0.077 0.923 23 H 0.015 0.985 24 H 0.025 0.975 25 H 0.261 0.739 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.372 0.628 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -3.431 -7.382 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.059 0.941 4 C -0.583 4.583 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.225 5.225 13 C -0.119 4.119 14 C 0.031 3.969 15 H 0.070 0.930 16 O -0.373 6.373 17 C -0.145 4.145 18 C -0.040 4.040 19 H 0.100 0.900 20 C 0.017 3.983 21 O -0.364 6.364 22 H 0.095 0.905 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.536 -3.240 -7.640 9.021 hybrid contribution 0.259 -0.608 1.777 1.896 sum 3.796 -3.848 -5.864 7.975 Atomic orbital electron populations 1.21730 0.97906 0.98909 0.99946 1.19425 0.92279 0.94637 0.84732 0.94114 1.21715 1.34585 1.10269 0.91709 0.92149 1.24918 0.94839 0.94794 0.98864 1.69904 1.38780 1.20185 1.23654 0.86729 0.79353 0.79811 0.82551 1.21327 1.20325 1.20300 1.65128 1.04922 1.11818 1.40663 1.23466 0.96741 0.90914 1.00752 1.22731 0.95173 0.88305 0.90725 0.92994 1.86519 1.40886 1.43061 1.66804 1.22444 0.97173 0.94176 1.00746 1.22736 0.91118 0.92314 0.97802 0.89966 1.22032 0.96025 0.98144 0.82141 1.86565 1.78576 1.45411 1.25844 0.90461 0.96568 0.95618 0.92872 0.91146 0.92015 0.78129 0.91584 0.89361 0.93218 0.94594 0.79180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.90 37.16 0.33 -2.79 16 2 C 0.20 4.95 2.31 -68.86 -0.16 4.79 16 3 H 0.04 1.14 7.35 -51.93 -0.38 0.76 16 4 C -0.54 -14.57 6.29 -34.44 -0.22 -14.79 16 5 H 0.06 1.65 6.05 -52.48 -0.32 1.33 16 6 C 0.07 1.87 5.32 -17.82 -0.09 1.78 16 7 N -0.89 -25.09 11.58 55.43 0.64 -24.45 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.50 -11.09 4.99 -216.10 -1.08 -12.16 16 13 C 0.01 0.20 4.84 -2.75 -0.01 0.19 16 14 C 0.09 1.58 4.36 -25.37 -0.11 1.47 16 15 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 16 O -0.57 -9.86 13.25 -35.23 -0.47 -10.33 16 17 C -0.11 -1.93 6.17 -24.87 -0.15 -2.09 16 18 C 0.07 1.41 2.51 -65.79 -0.17 1.24 16 19 H 0.08 1.89 6.14 -51.93 -0.32 1.57 16 20 C 0.09 1.69 6.96 37.16 0.26 1.95 16 21 O -0.56 -9.28 12.36 -35.23 -0.44 -9.72 16 22 H 0.08 2.06 6.36 -51.93 -0.33 1.73 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.60 7.06 -51.93 -0.37 0.23 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.07 1.56 5.83 -51.93 -0.30 1.26 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.37 4.90 9.11 45.56 0.41 5.31 16 29 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.09 1.55 7.01 -51.93 -0.36 1.18 16 31 H 0.05 0.96 7.33 -51.93 -0.38 0.58 16 32 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.36 4.16 9.12 45.56 0.42 4.57 16 LS Contribution 261.02 15.07 3.93 3.93 Total: -1.00 -30.48 261.02 -5.93 -36.41 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.18 Total: 8.31 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.32 Total: -8.24 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.44 Total: -36.62 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.90 Total: -20.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.48 -5.93 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306752565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.719 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds