Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47464 * 2 1 4 4 C 1.50702 * 109.46833 * 239.99895 * 2 1 3 5 5 H 1.08004 * 120.00196 * 245.56840 * 4 2 1 6 6 C 1.37876 * 119.99896 * 65.57802 * 4 2 1 7 7 N 1.31513 * 120.00335 * 8.37994 * 6 4 2 8 8 Si 1.86803 * 120.00119 * 188.38894 * 6 4 2 9 9 H 1.48500 * 109.47299 * 84.98578 * 8 6 4 10 10 H 1.48493 * 109.47391 * 204.99378 * 8 6 4 11 11 H 1.48504 * 109.46961 * 324.98994 * 8 6 4 12 12 N 1.46903 * 109.47220 * 120.00591 * 2 1 3 13 13 C 1.46855 * 110.99640 * 294.99478 * 12 2 1 14 14 C 1.53036 * 109.51988 * 174.15919 * 13 12 2 15 15 H 1.08997 * 109.50682 * 299.19581 * 14 13 12 16 16 O 1.42907 * 109.49710 * 179.12295 * 14 13 12 17 17 C 1.53117 * 109.28066 * 59.18542 * 14 13 12 18 18 C 1.53127 * 109.15550 * 302.34501 * 17 14 13 19 19 H 1.08996 * 109.49957 * 297.70573 * 18 17 14 20 20 O 1.42905 * 109.49755 * 177.63489 * 18 17 14 21 21 C 1.46845 * 111.00222 * 170.78670 * 12 2 1 22 22 H 1.09003 * 109.46778 * 305.10571 * 1 2 3 23 23 H 1.09001 * 109.47179 * 65.10922 * 1 2 3 24 24 H 1.09004 * 109.47318 * 185.10670 * 1 2 3 25 25 H 0.96990 * 120.00592 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46144 * 294.17850 * 13 12 2 27 27 H 1.09004 * 109.45725 * 54.15728 * 13 12 2 28 28 H 0.96700 * 113.99630 * 180.02562 * 16 14 13 29 29 H 1.08999 * 109.52384 * 62.24221 * 17 14 13 30 30 H 1.08998 * 109.52590 * 182.43750 * 17 14 13 31 31 H 0.96693 * 114.00127 * 60.00264 * 20 18 17 32 32 H 1.08996 * 109.46205 * 305.85756 * 21 12 2 33 33 H 1.09010 * 109.45861 * 65.82298 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5770 -1.6381 -1.1340 6 6 1.7965 -0.1762 -2.4795 7 7 1.2818 1.0287 -2.5929 8 14 2.2081 -1.1638 -4.0107 9 1 1.0740 -2.0647 -4.3384 10 1 2.4494 -0.2383 -5.1467 11 1 3.4283 -1.9736 -3.7643 12 7 2.0197 -0.6926 1.1994 13 6 1.6489 0.0388 2.4177 14 6 2.0458 -0.7814 3.6472 15 1 1.5166 -1.7342 3.6355 16 8 1.7033 -0.0601 4.8325 17 6 3.5558 -1.0337 3.6208 18 6 3.9222 -1.7534 2.3198 19 1 3.4232 -2.7219 2.2868 20 8 5.3373 -1.9437 2.2622 21 6 3.4709 -0.9053 1.1287 22 1 -0.3633 0.5910 0.8408 23 1 -0.3633 0.4325 -0.9322 24 1 -0.3634 -1.0236 0.0915 25 1 1.1156 1.4045 -3.4714 26 1 2.1673 0.9974 2.4376 27 1 0.5721 0.2079 2.4261 28 1 1.9274 -0.5216 5.6522 29 1 4.0851 -0.0823 3.6722 30 1 3.8364 -1.6542 4.4719 31 1 5.6932 -2.4716 2.9900 32 1 3.7175 -1.4215 0.2009 33 1 3.9808 0.0579 1.1548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306763684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -99.050859 kcal Electronic energy + Delta-G solvation = -15337.056315 eV Core-core repulsion = 12783.584987 eV Total energy + Delta-G solvation = -2553.471328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13031 -36.42448 -36.02767 -33.10264 -31.19934 -29.04457 -28.40606 -25.12980 -23.77600 -21.87642 -20.21508 -19.34346 -17.24620 -16.79083 -16.20391 -15.60921 -14.74385 -14.45312 -13.92007 -13.58368 -13.29025 -12.84843 -12.77091 -12.34139 -11.95772 -11.61409 -11.09276 -10.94799 -10.72126 -10.55087 -10.43346 -10.26651 -9.99513 -9.88361 -9.78145 -9.49973 -8.84106 -8.45447 -7.28977 -6.05063 -4.06946 3.32189 3.38137 3.41166 4.05364 4.42314 4.48924 4.92565 5.11067 5.22164 5.30459 5.39405 5.57186 5.66803 5.84541 6.06733 6.14591 6.29094 6.37887 6.61253 6.70907 6.81404 6.99795 7.10780 7.42082 7.61846 7.75928 7.78264 7.86158 8.06363 8.21234 8.54088 8.99120 9.57238 11.04143 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.009357 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.322029 B = 2991.676396 C = 3607.289986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.058 3.942 14 C 0.111 3.889 15 H 0.063 0.937 16 O -0.568 6.568 17 C -0.182 4.182 18 C 0.107 3.893 19 H 0.061 0.939 20 O -0.565 6.565 21 C 0.069 3.931 22 H 0.013 0.987 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.373 0.627 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.371 0.629 32 H 0.100 0.900 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -4.878 11.375 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H 0.027 0.973 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.071 4.071 14 C 0.051 3.949 15 H 0.081 0.919 16 O -0.372 6.372 17 C -0.220 4.220 18 C 0.048 3.952 19 H 0.079 0.921 20 O -0.369 6.369 21 C -0.059 4.059 22 H 0.032 0.968 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.219 0.781 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.216 0.784 32 H 0.118 0.882 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.340 -4.382 10.257 11.397 hybrid contribution 0.829 -0.400 0.104 0.926 sum 3.169 -4.783 10.361 11.843 Atomic orbital electron populations 1.21750 0.97727 0.99040 0.99865 1.19242 0.92072 0.92668 0.85070 0.97319 1.21118 1.35855 1.08117 0.89889 0.91665 1.24933 0.95299 0.94686 0.99064 1.69961 1.44580 1.14413 1.23886 0.86565 0.78828 0.79929 0.82434 1.20520 1.21389 1.19882 1.61851 1.11312 1.49880 1.02571 1.21921 1.01613 0.94590 0.88953 1.21742 0.92633 0.95107 0.85384 0.91933 1.86508 1.85837 1.49186 1.15714 1.23050 0.98218 1.02055 0.98707 1.21833 0.80435 0.98377 0.94546 0.92068 1.86538 1.22206 1.76145 1.52035 1.21820 0.88610 0.98041 0.97406 0.96841 0.91124 0.94335 0.92874 0.95139 0.90054 0.78130 0.90854 0.92241 0.78361 0.88202 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.86 37.16 0.33 -2.70 16 2 C 0.21 5.45 1.94 -68.86 -0.13 5.32 16 3 H 0.01 0.26 8.08 -51.94 -0.42 -0.16 16 4 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 5 H 0.07 1.77 6.29 -52.48 -0.33 1.44 16 6 C 0.06 1.72 5.18 -17.82 -0.09 1.63 16 7 N -0.89 -25.56 12.11 55.43 0.67 -24.88 16 8 Si 0.89 21.35 29.55 -169.99 -5.02 16.33 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -11.44 4.52 -228.08 -1.03 -12.47 16 13 C 0.06 1.11 4.94 -3.83 -0.02 1.10 16 14 C 0.11 1.70 3.63 -26.65 -0.10 1.61 16 15 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 16 O -0.57 -8.03 13.32 -35.23 -0.47 -8.50 16 17 C -0.18 -2.57 5.25 -26.61 -0.14 -2.71 16 18 C 0.11 1.74 3.63 -26.65 -0.10 1.65 16 19 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 20 O -0.57 -8.63 13.33 -35.23 -0.47 -9.10 16 21 C 0.07 1.44 4.80 -3.84 -0.02 1.42 16 22 H 0.01 0.28 6.65 -51.93 -0.35 -0.06 16 23 H 0.07 1.84 6.77 -51.93 -0.35 1.49 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.59 6.29 -51.93 -0.33 1.27 16 28 H 0.37 3.34 9.08 45.56 0.41 3.75 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.37 3.65 9.08 45.56 0.41 4.06 16 32 H 0.10 2.28 5.83 -51.93 -0.30 1.98 16 33 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -30.57 263.40 -6.22 -36.79 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.34 Total: 4.75 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.53 Total: -6.89 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.36 Total: -37.35 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.94 Total: -17.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.57 -6.22 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306763684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.258 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds