Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47464 * 2 1 4 4 C 1.50702 * 109.46833 * 239.99895 * 2 1 3 5 5 H 1.08004 * 120.00196 * 245.56840 * 4 2 1 6 6 C 1.37876 * 119.99896 * 65.57802 * 4 2 1 7 7 N 1.31513 * 120.00335 * 8.37994 * 6 4 2 8 8 Si 1.86803 * 120.00119 * 188.38894 * 6 4 2 9 9 H 1.48500 * 109.47299 * 84.98578 * 8 6 4 10 10 H 1.48493 * 109.47391 * 204.99378 * 8 6 4 11 11 H 1.48504 * 109.46961 * 324.98994 * 8 6 4 12 12 N 1.46903 * 109.47220 * 120.00591 * 2 1 3 13 13 C 1.46855 * 110.99640 * 294.99478 * 12 2 1 14 14 C 1.53036 * 109.51988 * 174.15919 * 13 12 2 15 15 H 1.08997 * 109.50682 * 299.19581 * 14 13 12 16 16 O 1.42907 * 109.49710 * 179.12295 * 14 13 12 17 17 C 1.53117 * 109.28066 * 59.18542 * 14 13 12 18 18 C 1.53127 * 109.15550 * 302.34501 * 17 14 13 19 19 H 1.08996 * 109.49957 * 297.70573 * 18 17 14 20 20 O 1.42905 * 109.49755 * 177.63489 * 18 17 14 21 21 C 1.46845 * 111.00222 * 170.78670 * 12 2 1 22 22 H 1.09003 * 109.46778 * 305.10571 * 1 2 3 23 23 H 1.09001 * 109.47179 * 65.10922 * 1 2 3 24 24 H 1.09004 * 109.47318 * 185.10670 * 1 2 3 25 25 H 0.96990 * 120.00592 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46144 * 294.17850 * 13 12 2 27 27 H 1.09004 * 109.45725 * 54.15728 * 13 12 2 28 28 H 0.96700 * 113.99630 * 180.02562 * 16 14 13 29 29 H 1.08999 * 109.52384 * 62.24221 * 17 14 13 30 30 H 1.08998 * 109.52590 * 182.43750 * 17 14 13 31 31 H 0.96693 * 114.00127 * 60.00264 * 20 18 17 32 32 H 1.08996 * 109.46205 * 305.85756 * 21 12 2 33 33 H 1.09010 * 109.45861 * 65.82298 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5770 -1.6381 -1.1340 6 6 1.7965 -0.1762 -2.4795 7 7 1.2818 1.0287 -2.5929 8 14 2.2081 -1.1638 -4.0107 9 1 1.0740 -2.0647 -4.3384 10 1 2.4494 -0.2383 -5.1467 11 1 3.4283 -1.9736 -3.7643 12 7 2.0197 -0.6926 1.1994 13 6 1.6489 0.0388 2.4177 14 6 2.0458 -0.7814 3.6472 15 1 1.5166 -1.7342 3.6355 16 8 1.7033 -0.0601 4.8325 17 6 3.5558 -1.0337 3.6208 18 6 3.9222 -1.7534 2.3198 19 1 3.4232 -2.7219 2.2868 20 8 5.3373 -1.9437 2.2622 21 6 3.4709 -0.9053 1.1287 22 1 -0.3633 0.5910 0.8408 23 1 -0.3633 0.4325 -0.9322 24 1 -0.3634 -1.0236 0.0915 25 1 1.1156 1.4045 -3.4714 26 1 2.1673 0.9974 2.4376 27 1 0.5721 0.2079 2.4261 28 1 1.9274 -0.5216 5.6522 29 1 4.0851 -0.0823 3.6722 30 1 3.8364 -1.6542 4.4719 31 1 5.6932 -2.4716 2.9900 32 1 3.7175 -1.4215 0.2009 33 1 3.9808 0.0579 1.1548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306763684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -126.106801 kcal Electronic energy + Delta-G solvation = -15338.229549 eV Core-core repulsion = 12783.584987 eV Total energy + Delta-G solvation = -2554.644562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55930 -37.60320 -37.59140 -34.95438 -32.83627 -30.58284 -30.10084 -27.16235 -25.33831 -23.31529 -21.96351 -20.86162 -18.63622 -18.25215 -17.90564 -17.22216 -16.24103 -16.00375 -15.57227 -15.23471 -14.80570 -14.39689 -14.19252 -13.86949 -13.65245 -13.12385 -12.82777 -12.79046 -12.61569 -12.39875 -12.16956 -12.02407 -11.72067 -11.30026 -11.10547 -10.93126 -10.64615 -10.56369 -9.13078 -8.17323 -6.26160 1.41978 1.43085 1.52527 2.39734 2.71720 3.14183 3.33861 3.66869 3.85176 3.94271 3.99261 4.24935 4.44429 4.47530 4.67850 4.73844 4.75321 4.88262 4.96696 4.97763 5.01292 5.18093 5.26499 5.44091 5.66371 5.69704 6.11193 6.23231 6.60922 6.86439 6.92705 6.94719 7.42009 8.91987 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.009357 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.322029 B = 2991.676396 C = 3607.289986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.036 1.036 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.523 5.523 13 C 0.053 3.947 14 C 0.122 3.878 15 H 0.079 0.921 16 O -0.579 6.579 17 C -0.171 4.171 18 C 0.119 3.881 19 H 0.075 0.925 20 O -0.581 6.581 21 C 0.068 3.932 22 H 0.030 0.970 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.009 0.991 27 H 0.076 0.924 28 H 0.399 0.601 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.398 0.602 32 H 0.072 0.928 33 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -6.756 12.917 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H -0.018 1.018 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.250 5.250 13 C -0.075 4.075 14 C 0.063 3.937 15 H 0.096 0.904 16 O -0.387 6.387 17 C -0.209 4.209 18 C 0.060 3.940 19 H 0.093 0.907 20 O -0.389 6.389 21 C -0.061 4.061 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.248 0.752 32 H 0.090 0.910 33 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.751 -6.290 11.854 13.699 hybrid contribution 0.746 0.231 -0.307 0.839 sum 3.496 -6.059 11.547 13.500 Atomic orbital electron populations 1.21560 0.96714 0.99540 0.99287 1.19071 0.92882 0.90453 0.86640 1.01799 1.21384 1.35837 1.08069 0.90945 0.91902 1.25741 0.95251 0.95554 1.02083 1.70086 1.45602 1.15816 1.24558 0.85545 0.78861 0.78516 0.78599 1.19602 1.21096 1.19344 1.61804 1.11847 1.49119 1.02183 1.21994 1.01042 0.94432 0.90069 1.21467 0.93648 0.94453 0.84157 0.90356 1.86453 1.85964 1.49823 1.16486 1.22953 0.96881 1.01931 0.99107 1.21543 0.81238 0.98061 0.93204 0.90677 1.86479 1.21437 1.77038 1.53925 1.21788 0.87912 0.97391 0.98980 0.95063 0.93595 0.93508 0.92821 0.97287 0.90605 0.75066 0.92408 0.87364 0.75221 0.90958 0.97925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.86 71.98 0.64 -4.90 16 2 C 0.22 11.37 1.94 44.17 0.09 11.46 16 3 H -0.04 -2.15 8.08 -2.39 -0.02 -2.17 16 4 C -0.52 -29.32 7.65 25.60 0.20 -29.13 16 5 H 0.06 3.48 6.29 -2.91 -0.02 3.46 16 6 C 0.01 0.72 5.18 84.65 0.44 1.16 16 7 N -0.92 -54.41 12.11 21.45 0.26 -54.15 16 8 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.52 -22.90 4.52 -875.51 -3.95 -26.86 16 13 C 0.05 2.04 4.94 86.32 0.43 2.46 16 14 C 0.12 3.42 3.63 30.65 0.11 3.53 16 15 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 16 O -0.58 -14.47 13.32 -148.98 -1.98 -16.45 16 17 C -0.17 -4.24 5.25 30.68 0.16 -4.07 16 18 C 0.12 3.60 3.63 30.65 0.11 3.71 16 19 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 20 O -0.58 -16.29 13.33 -148.98 -1.99 -18.28 16 21 C 0.07 2.85 4.80 86.32 0.41 3.27 16 22 H 0.03 1.37 6.65 -2.39 -0.02 1.35 16 23 H 0.05 2.45 6.77 -2.39 -0.02 2.44 16 24 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.26 14.71 8.31 -92.72 -0.77 13.94 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.08 2.95 6.29 -2.39 -0.01 2.93 16 28 H 0.40 5.35 9.08 -74.06 -0.67 4.68 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.40 6.28 9.08 -74.06 -0.67 5.61 16 32 H 0.07 3.40 5.83 -2.39 -0.01 3.38 16 33 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 Total: -1.00 -68.00 263.40 -3.29 -71.28 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -0.23 Total: 10.69 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 2.58 Total: -12.50 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.69 Total: -81.00 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -3.97 Total: -34.73 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.00 -3.29 -71.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306763684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.823 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds