Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47847 * 2 1 4 4 C 1.50703 * 109.47302 * 120.00207 * 2 1 3 5 5 H 1.08001 * 119.99842 * 114.59162 * 4 2 1 6 6 C 1.37876 * 119.99867 * 294.59078 * 4 2 1 7 7 N 1.31518 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00120 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46917 * 90.00187 * 8 6 4 10 10 H 1.48499 * 109.47106 * 210.00204 * 8 6 4 11 11 H 1.48501 * 109.46988 * 330.00301 * 8 6 4 12 12 N 1.46902 * 109.46873 * 239.99991 * 2 1 3 13 13 C 1.46847 * 110.99597 * 294.96274 * 12 2 1 14 14 C 1.53042 * 109.52497 * 174.19922 * 13 12 2 15 15 H 1.08993 * 109.50220 * 299.16148 * 14 13 12 16 16 O 1.42900 * 109.50574 * 179.07850 * 14 13 12 17 17 C 1.53126 * 109.30851 * 59.11721 * 14 13 12 18 18 C 1.53119 * 109.16035 * 302.36644 * 17 14 13 19 19 H 1.08991 * 109.50505 * 297.71582 * 18 17 14 20 20 O 1.42906 * 109.50026 * 177.59369 * 18 17 14 21 21 C 1.46850 * 111.00065 * 170.71362 * 12 2 1 22 22 H 1.09002 * 109.47244 * 59.99664 * 1 2 3 23 23 H 1.08996 * 109.47716 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46888 * 300.00354 * 1 2 3 25 25 H 0.97000 * 119.99804 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.49713 * 54.16424 * 13 12 2 27 27 H 1.09005 * 109.43312 * 294.19119 * 13 12 2 28 28 H 0.96692 * 113.99770 * 180.02562 * 16 14 13 29 29 H 1.09001 * 109.52093 * 62.27260 * 17 14 13 30 30 H 1.08997 * 109.52173 * 182.46339 * 17 14 13 31 31 H 0.96692 * 113.99510 * 60.00339 * 20 18 17 32 32 H 1.08998 * 109.46578 * 65.81909 * 21 12 2 33 33 H 1.09003 * 109.46341 * 305.85152 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5793 -1.6367 1.1337 6 6 1.7936 -0.1780 2.4796 7 7 1.1271 0.9497 2.5974 8 14 2.4157 -1.0589 4.0049 9 1 3.7811 -0.5760 4.3331 10 1 1.5048 -0.7797 5.1439 11 1 2.4558 -2.5214 3.7501 12 7 2.0195 -0.6925 -1.1995 13 6 1.6494 -2.1134 -1.1746 14 6 2.0470 -2.7687 -2.4992 15 1 1.5174 -2.2831 -3.3188 16 8 1.7061 -4.1561 -2.4664 17 6 3.5567 -2.6180 -2.7056 18 6 3.9216 -1.1311 -2.6795 19 1 3.4215 -0.6192 -3.5015 20 8 5.3366 -0.9847 -2.8155 21 6 3.4706 -0.5235 -1.3493 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.9589 1.3240 3.4763 26 1 0.5727 -2.2064 -1.0322 27 1 2.1683 -2.6090 -0.3541 28 1 1.9307 -4.6355 -3.2755 29 1 4.0871 -3.1373 -1.9075 30 1 3.8371 -3.0450 -3.6685 31 1 5.6928 -1.3512 -3.6363 32 1 3.9815 -1.0266 -0.5284 33 1 3.7161 0.5383 -1.3333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306763687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -100.387379 kcal Electronic energy + Delta-G solvation = -15456.972952 eV Core-core repulsion = 12903.443668 eV Total energy + Delta-G solvation = -2553.529284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.11514 -36.38966 -36.06083 -33.02265 -31.15845 -28.95399 -28.19616 -25.12962 -23.77416 -22.00021 -20.20441 -19.28188 -17.23803 -16.74347 -16.12971 -15.49757 -14.69838 -14.51736 -13.85915 -13.68140 -13.14005 -12.75489 -12.73583 -12.26113 -11.94735 -11.40676 -11.12871 -10.89508 -10.69916 -10.58047 -10.34182 -10.18504 -10.02260 -9.82827 -9.70543 -9.42262 -9.20460 -8.40804 -7.25028 -6.01473 -4.12423 3.28715 3.35542 3.39541 4.13037 4.41326 4.50738 4.97017 5.16422 5.25998 5.30476 5.47645 5.60303 5.69979 5.91998 6.11155 6.24885 6.39663 6.54995 6.68702 6.78951 6.91989 7.03115 7.14789 7.48572 7.67589 7.81626 7.84263 7.88868 8.08793 8.23897 8.38840 8.95834 9.55332 11.01161 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.030172 B = 0.009714 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.775702 B = 2881.597934 C = 3005.813670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.211 3.789 3 H 0.046 0.954 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.066 3.934 14 C 0.107 3.893 15 H 0.058 0.942 16 O -0.566 6.566 17 C -0.181 4.181 18 C 0.109 3.891 19 H 0.059 0.941 20 O -0.566 6.566 21 C 0.069 3.931 22 H 0.018 0.982 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.262 0.738 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.370 0.630 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.371 0.629 32 H 0.046 0.954 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -5.437 -10.854 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.064 0.936 4 C -0.585 4.585 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.258 5.258 13 C -0.062 4.062 14 C 0.048 3.952 15 H 0.076 0.924 16 O -0.370 6.370 17 C -0.219 4.219 18 C 0.050 3.950 19 H 0.077 0.923 20 O -0.370 6.370 21 C -0.059 4.059 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.576 -4.632 -9.927 11.253 hybrid contribution 1.035 -1.297 0.508 1.735 sum 3.611 -5.929 -9.419 11.701 Atomic orbital electron populations 1.21758 0.97618 0.99161 0.99980 1.19285 0.92261 0.94241 0.83724 0.93588 1.21702 1.36057 1.08835 0.91855 0.92434 1.24899 0.94782 0.94766 0.98900 1.69910 1.39947 1.18863 1.23763 0.86660 0.78741 0.80176 0.82867 1.20666 1.21131 1.19955 1.62240 1.10535 1.10252 1.42809 1.21780 1.01780 0.89278 0.93397 1.21831 0.92377 0.81201 0.99790 0.92388 1.86535 1.85801 1.21968 1.42704 1.23030 0.98528 0.98533 1.01859 1.21794 0.80363 0.93418 0.99468 0.92294 1.86532 1.22278 1.83508 1.44721 1.21700 0.89843 1.00790 0.93600 0.96325 0.95202 0.90513 0.92846 0.90173 0.93374 0.78378 0.90711 0.92386 0.78317 0.93577 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.93 37.15 0.33 -2.72 16 2 C 0.21 5.27 2.22 -68.87 -0.15 5.12 16 3 H 0.05 1.26 8.00 -51.93 -0.42 0.85 16 4 C -0.55 -14.83 7.17 -34.44 -0.25 -15.07 16 5 H 0.06 1.59 5.85 -52.49 -0.31 1.28 16 6 C 0.07 1.91 5.33 -17.82 -0.09 1.82 16 7 N -0.89 -25.20 11.73 55.43 0.65 -24.55 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.53 -11.38 4.61 -228.07 -1.05 -12.43 16 13 C 0.07 1.35 4.44 -3.83 -0.02 1.33 16 14 C 0.11 1.72 3.63 -26.64 -0.10 1.63 16 15 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 16 O -0.57 -8.57 13.32 -35.23 -0.47 -9.04 16 17 C -0.18 -2.63 5.25 -26.60 -0.14 -2.77 16 18 C 0.11 1.73 3.63 -26.65 -0.10 1.63 16 19 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 20 O -0.57 -8.46 13.32 -35.23 -0.47 -8.93 16 21 C 0.07 1.40 4.83 -3.83 -0.02 1.38 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.69 6.40 -51.93 -0.33 0.35 16 24 H 0.08 2.01 6.51 -51.92 -0.34 1.67 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.08 1.70 6.18 -51.93 -0.32 1.38 16 27 H 0.05 1.10 6.32 -51.93 -0.33 0.77 16 28 H 0.37 3.62 9.08 45.56 0.41 4.03 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.37 3.57 9.08 45.56 0.41 3.98 16 32 H 0.05 1.04 7.36 -51.93 -0.38 0.66 16 33 H 0.07 1.55 8.02 -51.93 -0.42 1.13 16 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -30.24 261.13 -6.22 -36.46 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.26 Total: 5.70 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.53 Total: -7.66 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.40 Total: -36.98 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.94 Total: -17.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.24 -6.22 -36.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306763687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.927 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds