Wall clock time and date at job start Mon Mar 30 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47847 * 2 1 4 4 C 1.50703 * 109.47302 * 120.00207 * 2 1 3 5 5 H 1.08001 * 119.99842 * 114.59162 * 4 2 1 6 6 C 1.37876 * 119.99867 * 294.59078 * 4 2 1 7 7 N 1.31518 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00120 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46917 * 90.00187 * 8 6 4 10 10 H 1.48499 * 109.47106 * 210.00204 * 8 6 4 11 11 H 1.48501 * 109.46988 * 330.00301 * 8 6 4 12 12 N 1.46902 * 109.46873 * 239.99991 * 2 1 3 13 13 C 1.46847 * 110.99597 * 294.96274 * 12 2 1 14 14 C 1.53042 * 109.52497 * 174.19922 * 13 12 2 15 15 H 1.08993 * 109.50220 * 299.16148 * 14 13 12 16 16 O 1.42900 * 109.50574 * 179.07850 * 14 13 12 17 17 C 1.53126 * 109.30851 * 59.11721 * 14 13 12 18 18 C 1.53119 * 109.16035 * 302.36644 * 17 14 13 19 19 H 1.08991 * 109.50505 * 297.71582 * 18 17 14 20 20 O 1.42906 * 109.50026 * 177.59369 * 18 17 14 21 21 C 1.46850 * 111.00065 * 170.71362 * 12 2 1 22 22 H 1.09002 * 109.47244 * 59.99664 * 1 2 3 23 23 H 1.08996 * 109.47716 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46888 * 300.00354 * 1 2 3 25 25 H 0.97000 * 119.99804 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.49713 * 54.16424 * 13 12 2 27 27 H 1.09005 * 109.43312 * 294.19119 * 13 12 2 28 28 H 0.96692 * 113.99770 * 180.02562 * 16 14 13 29 29 H 1.09001 * 109.52093 * 62.27260 * 17 14 13 30 30 H 1.08997 * 109.52173 * 182.46339 * 17 14 13 31 31 H 0.96692 * 113.99510 * 60.00339 * 20 18 17 32 32 H 1.08998 * 109.46578 * 65.81909 * 21 12 2 33 33 H 1.09003 * 109.46341 * 305.85152 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5793 -1.6367 1.1337 6 6 1.7936 -0.1780 2.4796 7 7 1.1271 0.9497 2.5974 8 14 2.4157 -1.0589 4.0049 9 1 3.7811 -0.5760 4.3331 10 1 1.5048 -0.7797 5.1439 11 1 2.4558 -2.5214 3.7501 12 7 2.0195 -0.6925 -1.1995 13 6 1.6494 -2.1134 -1.1746 14 6 2.0470 -2.7687 -2.4992 15 1 1.5174 -2.2831 -3.3188 16 8 1.7061 -4.1561 -2.4664 17 6 3.5567 -2.6180 -2.7056 18 6 3.9216 -1.1311 -2.6795 19 1 3.4215 -0.6192 -3.5015 20 8 5.3366 -0.9847 -2.8155 21 6 3.4706 -0.5235 -1.3493 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.9589 1.3240 3.4763 26 1 0.5727 -2.2064 -1.0322 27 1 2.1683 -2.6090 -0.3541 28 1 1.9307 -4.6355 -3.2755 29 1 4.0871 -3.1373 -1.9075 30 1 3.8371 -3.0450 -3.6685 31 1 5.6928 -1.3512 -3.6363 32 1 3.9815 -1.0266 -0.5284 33 1 3.7161 0.5383 -1.3333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306763687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:59 Heat of formation + Delta-G solvation = -127.173922 kcal Electronic energy + Delta-G solvation = -15458.134504 eV Core-core repulsion = 12903.443668 eV Total energy + Delta-G solvation = -2554.690836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56998 -37.65762 -37.55999 -34.87859 -32.80731 -30.51388 -29.85266 -27.24950 -25.35159 -23.41622 -21.90578 -20.90133 -18.63387 -18.10327 -17.91587 -17.13013 -16.34360 -15.97974 -15.48769 -15.27522 -14.88534 -14.22469 -14.10566 -13.90587 -13.40159 -13.23420 -13.03136 -12.66868 -12.58522 -12.40566 -12.05566 -11.92976 -11.72657 -11.29022 -11.24349 -11.05031 -10.66365 -10.54542 -9.11639 -8.12277 -6.31431 1.33864 1.35451 1.44857 2.36632 2.76046 3.10326 3.36436 3.69607 3.90641 3.98610 4.03471 4.31383 4.47701 4.50951 4.70757 4.76170 4.89994 4.96279 5.03237 5.08370 5.10560 5.18878 5.30138 5.46437 5.64058 5.87859 6.08292 6.25414 6.48718 6.84991 6.94841 6.95832 7.39070 8.87456 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.030172 B = 0.009714 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.775702 B = 2881.597934 C = 3005.813670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.211 3.789 3 H 0.015 0.985 4 C -0.555 4.555 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.275 1.275 12 N -0.521 5.521 13 C 0.066 3.934 14 C 0.118 3.882 15 H 0.079 0.921 16 O -0.581 6.581 17 C -0.171 4.171 18 C 0.121 3.879 19 H 0.080 0.920 20 O -0.581 6.581 21 C 0.067 3.933 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.067 0.933 27 H 0.014 0.986 28 H 0.397 0.603 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.398 0.602 32 H 0.012 0.988 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -6.657 -12.626 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 H 0.033 0.967 4 C -0.594 4.594 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.200 1.200 12 N -0.247 5.247 13 C -0.063 4.063 14 C 0.059 3.941 15 H 0.097 0.903 16 O -0.389 6.389 17 C -0.209 4.209 18 C 0.062 3.938 19 H 0.098 0.902 20 O -0.389 6.389 21 C -0.062 4.062 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.032 0.968 28 H 0.247 0.753 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.248 0.752 32 H 0.031 0.969 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.095 -5.878 -11.744 13.493 hybrid contribution 0.911 -0.929 1.024 1.656 sum 4.006 -6.807 -10.720 13.316 Atomic orbital electron populations 1.21571 0.96819 0.99179 0.99704 1.19106 0.92897 0.92838 0.84735 0.96694 1.21890 1.35906 1.08501 0.93098 0.93611 1.25597 0.95095 0.95501 1.01535 1.70010 1.40705 1.19837 1.24418 0.85746 0.78363 0.78935 0.79774 1.20285 1.20248 1.19999 1.62177 1.11308 1.10871 1.40381 1.21764 1.00560 0.88446 0.95482 1.21567 0.93643 0.81759 0.97147 0.90314 1.86476 1.85995 1.21439 1.44977 1.22946 0.96913 0.97312 1.03745 1.21522 0.81238 0.94235 0.96843 0.90224 1.86475 1.21494 1.84015 1.46932 1.21722 0.88762 1.00034 0.95703 0.94368 0.94917 0.92904 0.92685 0.91447 0.96781 0.75259 0.92849 0.87431 0.75201 0.96930 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 8.93 71.98 0.64 -4.95 16 2 C 0.21 10.89 2.22 44.17 0.10 10.99 16 3 H 0.02 0.86 8.00 -2.38 -0.02 0.84 16 4 C -0.55 -31.16 7.17 25.60 0.18 -30.97 16 5 H 0.05 2.64 5.85 -2.91 -0.02 2.62 16 6 C 0.02 1.30 5.33 84.65 0.45 1.75 16 7 N -0.91 -52.88 11.73 21.45 0.25 -52.63 16 8 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 N -0.52 -22.52 4.61 -875.48 -4.03 -26.55 16 13 C 0.07 2.68 4.44 86.33 0.38 3.07 16 14 C 0.12 3.48 3.63 30.65 0.11 3.59 16 15 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 16 O -0.58 -15.85 13.32 -148.98 -1.98 -17.83 16 17 C -0.17 -4.40 5.25 30.68 0.16 -4.24 16 18 C 0.12 3.55 3.63 30.65 0.11 3.66 16 19 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 20 O -0.58 -15.79 13.32 -148.98 -1.98 -17.78 16 21 C 0.07 2.72 4.83 86.33 0.42 3.14 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.03 1.53 6.40 -2.39 -0.02 1.51 16 24 H 0.05 2.82 6.51 -2.38 -0.02 2.80 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.07 2.86 6.18 -2.39 -0.01 2.85 16 27 H 0.01 0.66 6.32 -2.38 -0.02 0.64 16 28 H 0.40 6.06 9.08 -74.06 -0.67 5.39 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.40 6.02 9.08 -74.06 -0.67 5.35 16 32 H 0.01 0.58 7.36 -2.39 -0.02 0.57 16 33 H 0.06 2.56 8.02 -2.39 -0.02 2.54 16 Total: -1.00 -66.95 261.13 -3.39 -70.34 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -0.23 Total: 11.49 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 2.56 Total: -13.95 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.78 Total: -79.18 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -3.97 Total: -35.61 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.95 -3.39 -70.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306763687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.833 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds