Wall clock time and date at job start Mon Mar 30 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50705 * 109.47323 * 239.99927 * 2 1 3 5 5 H 1.07998 * 119.99933 * 245.62850 * 4 2 1 6 6 C 1.37878 * 119.99490 * 65.62973 * 4 2 1 7 7 N 1.31513 * 119.99417 * 197.50769 * 6 4 2 8 8 Si 1.86800 * 120.00341 * 17.50693 * 6 4 2 9 9 H 1.48497 * 109.46982 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47197 * 300.00033 * 8 6 4 11 11 H 1.48501 * 109.47101 * 60.00291 * 8 6 4 12 12 N 1.46897 * 109.47121 * 119.99865 * 2 1 3 13 13 C 1.46901 * 111.00321 * 275.00152 * 12 2 1 14 14 C 1.54156 * 109.06192 * 277.05212 * 13 12 2 15 15 O 1.40099 * 108.58816 * 161.67505 * 14 13 12 16 16 C 1.44605 * 117.10855 * 92.99929 * 15 14 13 17 17 C 1.54053 * 111.99780 * 318.64509 * 16 15 14 18 18 O 1.40096 * 112.65233 * 318.95523 * 17 16 15 19 19 C 1.44207 * 113.23482 * 93.03296 * 18 17 16 20 20 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 21 21 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 22 22 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 23 23 H 0.97001 * 120.00827 * 354.89209 * 7 6 4 24 24 H 1.00906 * 111.00016 * 38.95594 * 12 2 1 25 25 H 1.09001 * 109.04861 * 35.99030 * 13 12 2 26 26 H 1.08997 * 109.61519 * 281.41257 * 14 13 12 27 27 H 1.09006 * 109.61156 * 41.95152 * 14 13 12 28 28 H 1.08999 * 108.97597 * 197.99383 * 16 15 14 29 29 H 1.09004 * 108.90840 * 79.24681 * 16 15 14 30 30 H 1.08996 * 108.85158 * 198.13060 * 17 16 15 31 31 H 1.09002 * 108.76222 * 79.70754 * 17 16 15 32 32 H 1.09001 * 109.05457 * 159.63039 * 19 18 17 33 33 H 1.09000 * 109.05489 * 40.71298 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6385 -1.1339 6 6 1.7977 -0.1755 -2.4794 7 7 1.9163 -0.9294 -3.5504 8 14 1.3111 1.6199 -2.6502 9 1 1.1169 1.9457 -4.0859 10 1 0.0452 1.8620 -1.9125 11 1 2.3838 2.4791 -2.0878 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.4012 1.0186 2.2846 15 8 3.2783 2.1509 3.1003 16 6 3.7353 2.0312 4.4670 17 6 3.3358 0.6815 5.0929 18 8 2.0339 0.2927 4.7515 19 6 1.9806 -0.5557 3.5866 20 1 -0.3633 -1.0214 0.1135 21 1 -0.3634 0.6090 0.8277 22 1 -0.3633 0.4124 -0.9413 23 1 2.2403 -1.8401 -3.4692 24 1 1.4496 -1.4979 1.4100 25 1 1.2450 0.9183 2.2934 26 1 4.2213 0.3965 2.6429 27 1 3.5941 1.3270 1.2570 28 1 3.3017 2.8381 5.0577 29 1 4.8214 2.1229 4.4856 30 1 3.4063 0.7617 6.1776 31 1 4.0328 -0.0836 4.7509 32 1 1.0375 -1.1022 3.5873 33 1 2.8039 -1.2688 3.6277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306794838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:48 Heat of formation + Delta-G solvation = -82.461621 kcal Electronic energy + Delta-G solvation = -15321.972286 eV Core-core repulsion = 12769.220321 eV Total energy + Delta-G solvation = -2552.751965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85434 -36.54627 -36.41361 -33.09880 -31.17405 -29.32896 -26.71746 -26.50266 -24.65736 -22.09730 -20.87557 -19.78588 -17.56228 -17.28913 -16.59999 -15.94786 -15.18322 -14.43939 -14.27692 -13.99783 -13.68778 -13.41040 -13.14732 -12.47883 -12.03718 -11.91006 -11.61722 -11.35730 -11.20595 -10.75014 -10.46554 -10.30868 -9.95778 -9.76176 -9.65951 -9.34160 -8.95726 -8.17442 -7.55766 -6.41591 -4.00599 3.39831 3.45711 3.59344 3.62710 4.02664 4.50582 4.73986 4.88009 5.02425 5.07520 5.23654 5.29210 5.35273 5.38402 5.52966 5.66255 5.80761 5.97058 6.18161 6.29208 6.38321 6.40616 6.64338 6.81317 7.14743 7.18869 7.50490 7.76706 8.19147 8.28815 8.46916 9.02707 9.66737 10.98375 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045973 B = 0.008319 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.909755 B = 3364.897002 C = 3590.388386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.188 3.812 3 H 0.029 0.971 4 C -0.584 4.584 5 H 0.062 0.938 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 1.042 2.958 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.663 5.663 13 C 0.020 3.980 14 C 0.077 3.923 15 O -0.384 6.384 16 C 0.033 3.967 17 C 0.027 3.973 18 O -0.368 6.368 19 C 0.060 3.940 20 H 0.044 0.956 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.267 0.733 24 H 0.331 0.669 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 3.365 15.535 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.622 4.622 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.544 5.544 8 Si 0.871 3.129 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.297 5.297 13 C -0.091 4.091 14 C 0.000 4.000 15 O -0.302 6.302 16 C -0.044 4.044 17 C -0.051 4.051 18 O -0.285 6.285 19 C -0.016 4.016 20 H 0.063 0.937 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.149 0.851 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.967 4.825 14.319 15.238 hybrid contribution -0.148 -1.448 1.277 1.937 sum 1.818 3.376 15.596 16.061 Atomic orbital electron populations 1.22893 1.01022 0.99907 1.00287 1.19582 0.89176 0.94640 0.88703 0.95308 1.21950 1.39740 1.10295 0.90257 0.91935 1.25678 0.94973 1.04878 0.92136 1.70858 1.42209 1.09865 1.31425 0.84076 0.77094 0.75660 0.76041 1.21099 1.20294 1.20885 1.60752 1.58163 1.08414 1.02341 1.21734 0.99189 0.96261 0.91871 1.22372 0.95426 0.86774 0.95449 1.87475 1.85152 1.36660 1.20926 1.23742 0.98483 0.98583 0.83605 1.22918 0.85646 0.96180 1.00342 1.87724 1.26457 1.68817 1.45493 1.21905 1.02887 0.91922 0.84934 0.93681 0.96044 0.92018 0.92275 0.85087 0.92786 0.93332 0.88192 0.89203 0.92438 0.89151 0.92870 0.89301 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.84 37.16 0.33 -3.68 16 2 C 0.19 4.45 1.87 -68.86 -0.13 4.32 16 3 H 0.03 0.71 5.67 -51.93 -0.29 0.42 16 4 C -0.58 -16.37 9.11 -34.44 -0.31 -16.68 16 5 H 0.06 1.90 8.06 -52.49 -0.42 1.48 16 6 C 0.03 0.81 5.29 -17.82 -0.09 0.72 16 7 N -0.91 -27.96 13.70 55.43 0.76 -27.20 16 8 Si 1.04 25.46 26.29 -169.99 -4.47 20.99 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.28 5.76 56.52 0.33 -5.96 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.66 -13.40 6.01 -103.49 -0.62 -14.02 16 13 C 0.02 0.36 2.29 -70.11 -0.16 0.20 16 14 C 0.08 1.35 5.89 37.76 0.22 1.57 16 15 O -0.38 -6.45 10.28 -46.16 -0.47 -6.92 16 16 C 0.03 0.40 7.14 37.71 0.27 0.67 16 17 C 0.03 0.32 6.12 37.71 0.23 0.55 16 18 O -0.37 -5.41 10.50 -46.15 -0.48 -5.89 16 19 C 0.06 0.88 5.43 34.16 0.19 1.07 16 20 H 0.04 0.95 8.01 -51.93 -0.42 0.53 16 21 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 22 H 0.06 1.43 4.88 -51.93 -0.25 1.18 16 23 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 24 H 0.33 6.25 7.90 -39.29 -0.31 5.94 16 25 H 0.05 1.06 7.13 -51.93 -0.37 0.69 16 26 H 0.05 0.76 7.07 -51.93 -0.37 0.39 16 27 H 0.10 1.96 7.20 -51.93 -0.37 1.58 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.58 6.74 -51.93 -0.35 0.23 16 32 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.06 0.82 7.48 -51.93 -0.39 0.44 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -30.87 257.55 -5.72 -36.59 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.85 Total: 3.86 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 0.54 Total: -11.28 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.14 Total: -41.22 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.96 Total: -12.82 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.47 Total: 20.99 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.87 -5.72 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306794838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.873 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds