Wall clock time and date at job start Mon Mar 30 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50705 * 109.47323 * 239.99927 * 2 1 3 5 5 H 1.07998 * 119.99933 * 245.62850 * 4 2 1 6 6 C 1.37878 * 119.99490 * 65.62973 * 4 2 1 7 7 N 1.31513 * 119.99417 * 197.50769 * 6 4 2 8 8 Si 1.86800 * 120.00341 * 17.50693 * 6 4 2 9 9 H 1.48497 * 109.46982 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47197 * 300.00033 * 8 6 4 11 11 H 1.48501 * 109.47101 * 60.00291 * 8 6 4 12 12 N 1.46897 * 109.47121 * 119.99865 * 2 1 3 13 13 C 1.46901 * 111.00321 * 275.00152 * 12 2 1 14 14 C 1.54156 * 109.06192 * 277.05212 * 13 12 2 15 15 O 1.40099 * 108.58816 * 161.67505 * 14 13 12 16 16 C 1.44605 * 117.10855 * 92.99929 * 15 14 13 17 17 C 1.54053 * 111.99780 * 318.64509 * 16 15 14 18 18 O 1.40096 * 112.65233 * 318.95523 * 17 16 15 19 19 C 1.44207 * 113.23482 * 93.03296 * 18 17 16 20 20 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 21 21 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 22 22 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 23 23 H 0.97001 * 120.00827 * 354.89209 * 7 6 4 24 24 H 1.00906 * 111.00016 * 38.95594 * 12 2 1 25 25 H 1.09001 * 109.04861 * 35.99030 * 13 12 2 26 26 H 1.08997 * 109.61519 * 281.41257 * 14 13 12 27 27 H 1.09006 * 109.61156 * 41.95152 * 14 13 12 28 28 H 1.08999 * 108.97597 * 197.99383 * 16 15 14 29 29 H 1.09004 * 108.90840 * 79.24681 * 16 15 14 30 30 H 1.08996 * 108.85158 * 198.13060 * 17 16 15 31 31 H 1.09002 * 108.76222 * 79.70754 * 17 16 15 32 32 H 1.09001 * 109.05457 * 159.63039 * 19 18 17 33 33 H 1.09000 * 109.05489 * 40.71298 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6385 -1.1339 6 6 1.7977 -0.1755 -2.4794 7 7 1.9163 -0.9294 -3.5504 8 14 1.3111 1.6199 -2.6502 9 1 1.1169 1.9457 -4.0859 10 1 0.0452 1.8620 -1.9125 11 1 2.3838 2.4791 -2.0878 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.4012 1.0186 2.2846 15 8 3.2783 2.1509 3.1003 16 6 3.7353 2.0312 4.4670 17 6 3.3358 0.6815 5.0929 18 8 2.0339 0.2927 4.7515 19 6 1.9806 -0.5557 3.5866 20 1 -0.3633 -1.0214 0.1135 21 1 -0.3634 0.6090 0.8277 22 1 -0.3633 0.4124 -0.9413 23 1 2.2403 -1.8401 -3.4692 24 1 1.4496 -1.4979 1.4100 25 1 1.2450 0.9183 2.2934 26 1 4.2213 0.3965 2.6429 27 1 3.5941 1.3270 1.2570 28 1 3.3017 2.8381 5.0577 29 1 4.8214 2.1229 4.4856 30 1 3.4063 0.7617 6.1776 31 1 4.0328 -0.0836 4.7509 32 1 1.0375 -1.1022 3.5873 33 1 2.8039 -1.2688 3.6277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306794838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:48 Heat of formation + Delta-G solvation = -106.771346 kcal Electronic energy + Delta-G solvation = -15323.026435 eV Core-core repulsion = 12769.220321 eV Total energy + Delta-G solvation = -2553.806114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04185 -38.05985 -37.66579 -35.01367 -32.89515 -30.54206 -28.22129 -27.72437 -26.72658 -23.11751 -22.40202 -21.52196 -19.63942 -18.48486 -17.81863 -17.19048 -16.42679 -16.06255 -15.54043 -15.42933 -15.16071 -14.92752 -14.73409 -14.01248 -13.87625 -13.47668 -13.30344 -12.87801 -12.42937 -12.34217 -11.98929 -11.85691 -11.60805 -11.45267 -11.12417 -10.88058 -10.51435 -10.32812 -9.23344 -8.68860 -6.30763 1.44635 1.51518 1.69821 2.46112 2.47771 2.96822 3.08249 3.59396 3.69799 3.75023 4.01882 4.13648 4.26361 4.30851 4.47795 4.53750 4.62165 4.64978 4.65282 4.74861 4.84733 4.88708 5.01995 5.07197 5.41241 5.78816 6.08260 6.09791 6.29667 6.43778 6.62630 6.74729 7.45692 8.67939 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045973 B = 0.008319 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.909755 B = 3364.897002 C = 3590.388386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.192 3.808 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.025 0.975 6 C -0.021 4.021 7 N -0.941 5.941 8 Si 1.079 2.921 9 H -0.287 1.287 10 H -0.247 1.247 11 H -0.269 1.269 12 N -0.669 5.669 13 C 0.028 3.972 14 C 0.082 3.918 15 O -0.408 6.408 16 C 0.024 3.976 17 C 0.020 3.980 18 O -0.380 6.380 19 C 0.064 3.936 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.252 0.748 24 H 0.339 0.661 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 4.426 17.849 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.622 4.622 5 H 0.043 0.957 6 C -0.219 4.219 7 N -0.578 5.578 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.171 1.171 11 H -0.195 1.195 12 N -0.303 5.303 13 C -0.083 4.083 14 C 0.004 3.996 15 O -0.326 6.326 16 C -0.052 4.052 17 C -0.058 4.058 18 O -0.297 6.297 19 C -0.013 4.013 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.158 0.842 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.690 5.872 16.679 17.763 hybrid contribution 0.032 -1.811 0.670 1.931 sum 1.723 4.061 17.348 17.900 Atomic orbital electron populations 1.22744 0.99330 1.00726 1.00661 1.19347 0.90251 0.93818 0.88379 0.95824 1.22160 1.38602 1.08963 0.92487 0.95657 1.26999 0.94793 1.08111 0.91990 1.70983 1.44731 1.09507 1.32546 0.83625 0.78632 0.71281 0.76356 1.21350 1.17130 1.19485 1.60534 1.58229 1.09047 1.02525 1.21735 0.98676 0.95688 0.92157 1.22172 0.95799 0.87133 0.94456 1.87425 1.85620 1.36476 1.23101 1.24062 1.00028 0.99710 0.81425 1.23171 0.84555 0.95812 1.02223 1.87716 1.28298 1.68882 1.44808 1.21806 1.04066 0.91644 0.83752 0.93218 0.93505 0.93191 0.93866 0.84212 0.94525 0.91821 0.91236 0.87806 0.90246 0.85969 0.92035 0.88281 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.42 8.84 71.98 0.64 -6.78 16 2 C 0.19 8.94 1.87 44.17 0.08 9.02 16 3 H 0.02 1.15 5.67 -2.39 -0.01 1.14 16 4 C -0.58 -33.23 9.11 25.60 0.23 -33.00 16 5 H 0.03 1.59 8.06 -2.91 -0.02 1.56 16 6 C -0.02 -1.22 5.29 84.66 0.45 -0.77 16 7 N -0.94 -59.36 13.70 21.45 0.29 -59.07 16 8 Si 1.08 50.85 26.29 68.60 1.80 52.66 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 10 H -0.25 -10.41 5.76 99.48 0.57 -9.84 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.67 -26.42 6.01 -481.33 -2.89 -29.31 16 13 C 0.03 0.95 2.29 43.36 0.10 1.05 16 14 C 0.08 2.76 5.89 72.37 0.43 3.19 16 15 O -0.41 -12.94 10.28 -129.21 -1.33 -14.26 16 16 C 0.02 0.51 7.14 72.34 0.52 1.02 16 17 C 0.02 0.39 6.12 72.34 0.44 0.83 16 18 O -0.38 -9.99 10.50 -129.17 -1.36 -11.34 16 19 C 0.06 1.72 5.43 70.04 0.38 2.10 16 20 H 0.05 2.02 8.01 -2.39 -0.02 2.00 16 21 H 0.05 1.73 7.49 -2.39 -0.02 1.71 16 22 H 0.05 2.21 4.88 -2.39 -0.01 2.20 16 23 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 24 H 0.34 12.37 7.90 -89.69 -0.71 11.66 16 25 H 0.04 1.37 7.13 -2.39 -0.02 1.35 16 26 H 0.06 1.88 7.07 -2.39 -0.02 1.87 16 27 H 0.07 2.72 7.20 -2.38 -0.02 2.70 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.12 6.74 -2.39 -0.02 1.10 16 32 H 0.10 2.45 8.03 -2.39 -0.02 2.43 16 33 H 0.07 1.78 7.48 -2.39 -0.02 1.76 16 Total: -1.00 -67.08 257.55 0.00 -67.08 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.22 Total: 17.60 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.26 Total: -23.34 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.60 Total: -88.38 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -2.68 Total: -25.61 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.80 Total: 52.66 kcal Total: -67.08 0.00 -67.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306794838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.694 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds