Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.50703 * 109.47229 * 120.00381 * 2 1 3 5 5 H 1.07998 * 119.99915 * 119.99422 * 4 2 1 6 6 C 1.37877 * 119.99654 * 300.00091 * 4 2 1 7 7 N 1.31511 * 120.00343 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99740 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47388 * 89.99755 * 8 6 4 10 10 H 1.48500 * 109.47089 * 209.99755 * 8 6 4 11 11 H 1.48503 * 109.46874 * 329.99592 * 8 6 4 12 12 N 1.46899 * 109.46858 * 240.00149 * 2 1 3 13 13 C 1.46909 * 110.99764 * 154.98616 * 12 2 1 14 14 C 1.51133 * 109.09292 * 154.20492 * 13 12 2 15 15 O 1.43429 * 108.24377 * 210.79878 * 14 13 12 16 16 C 1.36906 * 117.60091 * 279.30364 * 15 14 13 17 17 C 1.54475 * 111.06115 * 61.43154 * 16 15 14 18 18 O 1.40872 * 109.24670 * 285.46929 * 17 16 15 19 19 C 1.44060 * 117.00176 * 93.22068 * 18 17 16 20 20 H 1.08998 * 109.47189 * 185.53634 * 1 2 3 21 21 H 1.09008 * 109.46834 * 305.53455 * 1 2 3 22 22 H 1.08997 * 109.47207 * 65.53200 * 1 2 3 23 23 H 0.97002 * 120.00001 * 180.02562 * 7 6 4 24 24 H 1.00899 * 111.00104 * 278.93806 * 12 2 1 25 25 H 1.09006 * 109.02714 * 35.15500 * 13 12 2 26 26 H 1.08996 * 109.71097 * 91.10578 * 14 13 12 27 27 H 1.09008 * 109.70554 * 330.48371 * 14 13 12 28 28 H 1.08996 * 109.15914 * 181.84581 * 16 15 14 29 29 H 1.09000 * 109.15645 * 301.08281 * 16 15 14 30 30 H 1.09000 * 109.51028 * 45.40552 * 17 16 15 31 31 H 1.09004 * 109.50535 * 165.49315 * 17 16 15 32 32 H 1.08998 * 108.92578 * 78.68953 * 19 18 17 33 33 H 1.09000 * 108.92367 * 197.26432 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5656 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 3.3669 -0.2313 -1.5605 14 6 4.0745 -1.3242 -2.3279 15 8 5.4794 -1.2261 -2.0565 16 6 6.1961 -0.2902 -2.7529 17 6 5.6789 1.1356 -2.4602 18 8 4.4560 1.3328 -3.1311 19 6 3.2518 1.0517 -2.3921 20 1 -0.3633 -1.0228 0.0991 21 1 -0.3633 0.5973 0.8364 22 1 -0.3633 0.4256 -0.9353 23 1 0.7096 1.1616 3.4845 24 1 2.0022 -1.6932 -1.0717 25 1 3.9251 -0.0166 -0.6492 26 1 3.8966 -1.1979 -3.3958 27 1 3.7050 -2.2979 -2.0058 28 1 7.2453 -0.3564 -2.4652 29 1 6.1045 -0.4911 -3.8203 30 1 5.5290 1.2554 -1.3873 31 1 6.4085 1.8663 -2.8096 32 1 3.0432 1.8879 -1.7248 33 1 2.4236 0.9456 -3.0928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306794839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = -109.334213 kcal Electronic energy + Delta-G solvation = -15365.800244 eV Core-core repulsion = 12811.882996 eV Total energy + Delta-G solvation = -2553.917248 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06046 -37.96110 -37.64757 -34.89655 -32.47424 -30.27228 -27.97017 -27.76087 -27.16795 -23.51737 -22.19707 -21.37106 -18.87379 -17.92534 -17.76622 -17.48904 -16.79365 -16.54663 -15.59227 -15.31091 -15.04611 -14.96783 -14.33682 -13.65997 -13.42091 -13.20429 -12.94532 -12.86594 -12.70290 -12.33961 -12.13062 -12.04767 -11.70350 -11.48265 -11.13576 -10.87114 -10.55513 -10.30789 -9.24882 -8.12229 -6.32375 1.36234 1.38100 1.47454 2.37284 2.67476 2.74902 3.11208 3.60786 3.73024 3.94996 4.09953 4.23458 4.32396 4.33878 4.49283 4.71991 4.75388 4.84064 4.88292 4.97785 5.04143 5.13149 5.26372 5.45184 5.63354 6.01212 6.08796 6.20157 6.25870 6.51546 6.70992 6.92051 7.39171 8.87267 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034145 B = 0.008990 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.832482 B = 3113.779779 C = 3447.992960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.559 4.559 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.669 5.669 13 C 0.035 3.965 14 C 0.076 3.924 15 O -0.400 6.400 16 C 0.041 3.959 17 C 0.014 3.986 18 O -0.396 6.396 19 C 0.081 3.919 20 H 0.028 0.972 21 H 0.054 0.946 22 H 0.032 0.968 23 H 0.263 0.737 24 H 0.339 0.661 25 H 0.027 0.973 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.119 0.881 32 H 0.032 0.968 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.631 -1.881 -9.339 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.598 4.598 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.302 5.302 13 C -0.077 4.077 14 C 0.000 4.000 15 O -0.318 6.318 16 C -0.037 4.037 17 C -0.063 4.063 18 O -0.315 6.315 19 C 0.004 3.996 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.157 0.843 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.050 0.950 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.319 -1.376 -9.710 12.237 hybrid contribution 0.484 -0.386 2.042 2.134 sum 7.803 -1.762 -7.668 11.081 Atomic orbital electron populations 1.21517 0.97108 0.99495 0.99073 1.19004 0.92810 0.92471 0.85271 0.98125 1.22091 1.31880 1.12896 0.92969 0.93103 1.25672 0.94996 0.95572 1.01825 1.70011 1.37126 1.23795 1.24171 0.85663 0.77989 0.79219 0.79422 1.20595 1.20618 1.19305 1.60841 1.20841 1.10249 1.38299 1.22333 0.91410 0.96348 0.97565 1.22599 0.79411 0.98191 0.99763 1.86511 1.20978 1.57664 1.66637 1.22650 0.96780 0.87532 0.96709 1.23583 0.86533 0.99154 0.97015 1.87469 1.13812 1.88084 1.42101 1.22797 0.86510 0.94828 0.95472 0.95233 0.92706 0.94865 0.92787 0.84298 0.95498 0.90662 0.87978 0.85856 0.92537 0.94102 0.86295 0.95011 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 9.21 71.98 0.66 -4.83 16 2 C 0.21 10.62 2.38 44.17 0.11 10.73 16 3 H 0.00 0.04 7.24 -2.39 -0.02 0.03 16 4 C -0.56 -30.28 8.25 25.60 0.21 -30.07 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -52.17 11.38 21.45 0.24 -51.93 16 8 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.67 -27.31 6.02 -475.86 -2.87 -30.17 16 13 C 0.03 1.30 1.92 44.41 0.09 1.39 16 14 C 0.08 2.38 6.10 71.37 0.44 2.81 16 15 O -0.40 -12.57 10.05 -104.15 -1.05 -13.61 16 16 C 0.04 1.01 6.62 72.48 0.48 1.49 16 17 C 0.01 0.39 6.46 72.48 0.47 0.85 16 18 O -0.40 -12.61 10.10 -146.88 -1.48 -14.09 16 19 C 0.08 2.85 6.07 72.09 0.44 3.29 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.05 2.92 6.24 -2.38 -0.01 2.90 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 24 H 0.34 13.27 7.56 -89.69 -0.68 12.59 16 25 H 0.03 1.21 6.91 -2.38 -0.02 1.20 16 26 H 0.08 2.11 7.68 -2.39 -0.02 2.10 16 27 H 0.10 3.01 7.38 -2.38 -0.02 2.99 16 28 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.04 1.28 7.17 -2.39 -0.02 1.26 16 31 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.03 1.24 7.68 -2.39 -0.02 1.22 16 33 H 0.10 3.51 8.12 -2.39 -0.02 3.49 16 Total: -1.00 -59.97 263.46 0.62 -59.35 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.41 Total: 17.74 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 3.34 Total: -12.81 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.62 Total: -82.10 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -2.53 Total: -27.71 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -59.97 0.62 -59.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306794839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.982 kcal (2) G-P(sol) polarization free energy of solvation -59.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds