Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99728 * 2 1 4 4 H 1.48508 * 109.47084 * 269.99625 * 3 2 1 5 5 H 1.48497 * 109.47669 * 29.99961 * 3 2 1 6 6 H 1.48505 * 109.47201 * 149.99958 * 3 2 1 7 7 C 1.37869 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47002 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.46890 * 184.98888 * 10 9 7 12 12 C 1.44424 * 110.95684 * 301.83182 * 11 10 9 13 13 C 1.53842 * 112.03722 * 215.95025 * 12 11 10 14 14 O 1.44252 * 112.83145 * 318.48829 * 13 12 11 15 15 C 1.40308 * 117.15506 * 317.91979 * 14 13 12 16 16 C 1.54359 * 108.92077 * 93.11815 * 15 14 13 17 17 H 1.09002 * 109.07541 * 43.52889 * 16 15 14 18 18 O 1.42893 * 109.08009 * 162.50196 * 16 15 14 19 19 C 1.46580 * 111.47541 * 283.01583 * 16 15 14 20 20 H 0.97004 * 120.00273 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47004 * 60.00376 * 9 7 2 22 22 H 1.08999 * 109.46923 * 299.99854 * 9 7 2 23 23 H 1.08998 * 109.47359 * 64.98793 * 10 9 7 24 24 H 1.09002 * 109.46998 * 304.99122 * 10 9 7 25 25 H 1.08997 * 109.00481 * 95.28087 * 12 11 10 26 26 H 1.09004 * 108.91493 * 336.54769 * 12 11 10 27 27 H 1.08997 * 108.81030 * 197.62547 * 13 12 11 28 28 H 1.09002 * 108.72807 * 79.29270 * 13 12 11 29 29 H 1.08997 * 109.56154 * 333.28666 * 15 14 13 30 30 H 1.08999 * 109.56025 * 212.95173 * 15 14 13 31 31 H 0.96703 * 114.00356 * 301.97559 * 18 16 15 32 32 H 1.08997 * 108.89315 * 181.55736 * 19 16 15 33 33 H 1.08999 * 108.89610 * 300.15190 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5147 -4.9308 -0.1199 12 6 0.5667 -5.0854 0.9586 13 6 0.4494 -6.5488 1.4187 14 8 0.4361 -7.4819 0.3187 15 6 -0.3307 -7.1370 -0.8045 16 6 0.5730 -6.4109 -1.8237 17 1 1.5237 -6.9392 -1.8966 18 8 -0.0641 -6.4201 -3.1027 19 6 0.8253 -5.0233 -1.4242 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8903 23 1 2.8116 -3.6559 0.9318 24 1 2.9293 -3.5552 -0.8414 25 1 -0.4113 -4.7400 0.6238 26 1 0.8881 -4.4740 1.8019 27 1 -0.4720 -6.6650 1.9893 28 1 1.2949 -6.7809 2.0663 29 1 -1.1438 -6.4770 -0.5025 30 1 -0.7403 -8.0396 -1.2579 31 1 -0.2642 -7.3056 -3.4361 32 1 1.4421 -4.5438 -2.1842 33 1 -0.1265 -4.4963 -1.3583 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306841552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = -91.837492 kcal Electronic energy + Delta-G solvation = -15155.863367 eV Core-core repulsion = 12602.704834 eV Total energy + Delta-G solvation = -2553.158533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61706 -36.56951 -36.43602 -32.99991 -31.04576 -30.08191 -27.23414 -26.20162 -24.02344 -21.88462 -21.03966 -19.38755 -17.52574 -16.70380 -16.39693 -15.69627 -15.22805 -14.58961 -14.46754 -13.88658 -13.76343 -13.33213 -12.71071 -12.27129 -12.06548 -11.88704 -11.53460 -10.95477 -10.90836 -10.79580 -10.71950 -10.42637 -10.08588 -9.92972 -9.84157 -9.21279 -9.11257 -8.40436 -7.67745 -6.05615 -4.09110 3.28956 3.35238 3.38460 3.64968 4.25270 4.42157 4.90688 4.94559 5.02411 5.28555 5.30526 5.39188 5.43688 5.63883 5.73758 5.88199 6.01768 6.13790 6.25670 6.31131 6.33556 6.62101 6.81371 7.35480 7.37560 7.51477 7.62337 7.74737 7.78772 7.94145 8.35757 8.97745 9.55634 11.05408 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045431 B = 0.007088 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.170590 B = 3949.309077 C = 4217.387188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C -0.010 4.010 10 C 0.061 3.939 11 N -0.527 5.527 12 C 0.020 3.980 13 C 0.072 3.928 14 O -0.379 6.379 15 C 0.043 3.957 16 C 0.084 3.916 17 H 0.066 0.934 18 O -0.565 6.565 19 C 0.056 3.944 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.016 0.984 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.376 0.624 32 H 0.079 0.921 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -13.140 -0.441 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.048 4.048 10 C -0.066 4.066 11 N -0.252 5.252 12 C -0.110 4.110 13 C -0.005 4.005 14 O -0.297 6.297 15 C -0.035 4.035 16 C 0.024 3.976 17 H 0.084 0.916 18 O -0.369 6.369 19 C -0.072 4.072 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.222 0.778 32 H 0.097 0.903 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.275 -12.922 -0.327 12.929 hybrid contribution -0.458 1.407 -0.109 1.484 sum -0.733 -11.515 -0.435 11.546 Atomic orbital electron populations 1.69965 1.06118 1.26692 1.50600 1.25029 0.94852 0.99372 0.95137 0.86570 0.79838 0.83305 0.78162 1.20614 1.21215 1.19795 1.21151 0.93068 0.90867 1.50950 0.92489 1.19722 0.94872 0.92829 0.97371 1.22480 0.96690 0.86073 1.01333 1.61469 1.26496 1.36680 1.00512 1.22463 0.95820 0.96052 0.96630 1.23152 1.01009 0.88629 0.87720 1.87351 1.70922 1.45264 1.26197 1.23005 0.93641 0.99273 0.87550 1.21378 0.95624 0.97903 0.82660 0.91585 1.86541 1.82221 1.33460 1.34718 1.20784 0.99133 0.94582 0.92683 0.92964 0.96405 0.96542 0.91569 0.91603 0.93889 0.89678 0.93271 0.89250 0.92884 0.90104 0.77771 0.90294 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C -0.01 -0.25 4.43 -27.88 -0.12 -0.37 16 10 C 0.06 1.26 5.00 -3.82 -0.02 1.25 16 11 N -0.53 -9.69 4.61 -239.18 -1.10 -10.80 16 12 C 0.02 0.34 4.01 -4.71 -0.02 0.32 16 13 C 0.07 1.00 7.02 37.60 0.26 1.27 16 14 O -0.38 -5.67 10.27 -33.66 -0.35 -6.02 16 15 C 0.04 0.59 6.01 37.87 0.23 0.81 16 16 C 0.08 1.26 3.40 -29.08 -0.10 1.16 16 17 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 18 O -0.57 -7.85 13.26 -35.23 -0.47 -8.31 16 19 C 0.06 1.02 3.65 -6.38 -0.02 1.00 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.02 0.49 6.84 -51.93 -0.36 0.13 16 22 H 0.02 0.44 7.03 -51.93 -0.37 0.07 16 23 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 24 H 0.07 1.38 7.93 -51.93 -0.41 0.96 16 25 H 0.04 0.77 6.72 -51.93 -0.35 0.42 16 26 H 0.08 1.46 7.08 -51.93 -0.37 1.09 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.75 7.15 -51.93 -0.37 0.38 16 30 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.38 3.22 9.01 45.56 0.41 3.63 16 32 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 33 H 0.05 0.94 6.81 -51.93 -0.35 0.58 16 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -31.42 263.29 -6.65 -38.07 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.21 Total: 0.62 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.20 Total: -8.01 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.37 Total: -36.95 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.81 Total: -14.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.42 -6.65 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306841552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.766 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds