Wall clock time and date at job start Mon Mar 30 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47507 * 2 1 4 4 C 1.50699 * 109.47231 * 120.00618 * 2 1 3 5 5 H 1.08001 * 120.00201 * 119.99812 * 4 2 1 6 6 C 1.37879 * 119.99841 * 299.99222 * 4 2 1 7 7 N 1.31513 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00056 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47069 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46986 * 120.00435 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00714 * 8 6 4 12 12 N 1.46905 * 109.47231 * 240.00459 * 2 1 3 13 13 C 1.47399 * 110.99568 * 306.04798 * 12 2 1 14 14 C 1.51044 * 111.55829 * 84.90117 * 13 12 2 15 15 O 1.43446 * 107.56118 * 94.02572 * 14 13 12 16 16 C 1.36609 * 117.84173 * 277.90339 * 15 14 13 17 17 C 1.54714 * 110.78564 * 61.03883 * 16 15 14 18 18 H 1.09000 * 109.54068 * 46.62426 * 17 16 15 19 19 O 1.42905 * 109.53782 * 166.78035 * 17 16 15 20 20 C 1.48028 * 110.99973 * 73.22388 * 12 2 1 21 21 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46868 * 299.99891 * 1 2 3 23 23 H 1.09000 * 109.47051 * 59.99688 * 1 2 3 24 24 H 0.97006 * 119.99971 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.06608 * 324.36342 * 13 12 2 26 26 H 1.09000 * 109.00350 * 205.39670 * 13 12 2 27 27 H 1.09001 * 109.83881 * 334.51170 * 14 13 12 28 28 H 1.08996 * 109.83977 * 213.54020 * 14 13 12 29 29 H 1.09001 * 109.21968 * 300.70218 * 16 15 14 30 30 H 1.09000 * 109.18287 * 181.35215 * 16 15 14 31 31 H 0.96696 * 114.00036 * 300.00061 * 19 17 16 32 32 H 1.09000 * 108.74893 * 71.42789 * 20 12 2 33 33 H 1.08992 * 108.75502 * 313.31424 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1464 -2.2873 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0197 -0.6924 -1.1995 13 6 1.4322 -2.0399 -1.3083 14 6 0.0808 -2.0035 -1.9819 15 8 0.2869 -2.2522 -3.3795 16 6 0.6685 -1.2016 -4.1649 17 6 2.0265 -0.6289 -3.6941 18 1 2.7276 -1.4460 -3.5242 19 8 2.5481 0.2480 -4.6947 20 6 1.8204 0.1370 -2.4093 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7084 1.1608 3.4844 25 1 1.3209 -2.4615 -0.3093 26 1 2.1025 -2.6735 -1.8892 27 1 -0.3750 -1.0230 -1.8438 28 1 -0.5637 -2.7747 -1.5600 29 1 -0.0887 -0.4195 -4.1109 30 1 0.7607 -1.5408 -5.1967 31 1 2.6995 -0.1771 -5.5499 32 1 2.5221 0.9707 -2.3820 33 1 0.8061 0.5355 -2.3978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306968669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:27 Heat of formation + Delta-G solvation = -75.238468 kcal Electronic energy + Delta-G solvation = -15684.416874 eV Core-core repulsion = 13131.978128 eV Total energy + Delta-G solvation = -2552.438746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93938 -36.50789 -36.38280 -32.78286 -30.76560 -29.31301 -26.96484 -26.05322 -24.92549 -21.66146 -20.94538 -19.05610 -17.52329 -16.48652 -16.33929 -15.92356 -15.14699 -14.55268 -14.41592 -13.64476 -13.28339 -12.76531 -12.68206 -12.27796 -11.77718 -11.41108 -11.35592 -11.01241 -10.89989 -10.64087 -10.52138 -10.34140 -10.20316 -9.92144 -9.61613 -9.12277 -8.92829 -8.39860 -7.16271 -6.05034 -4.09058 3.28153 3.36392 3.40897 3.91358 4.27903 4.46390 4.88714 5.02744 5.19270 5.26862 5.40836 5.53336 5.78798 5.84484 5.94535 5.97909 6.23365 6.37583 6.40142 6.61833 6.70763 6.78170 7.03924 7.35285 7.59447 7.65694 7.78494 7.85937 8.10662 8.30810 8.52157 8.97449 9.56304 11.02029 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.008609 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.360478 B = 3251.724956 C = 3378.767274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.212 3.788 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.533 5.533 13 C 0.030 3.970 14 C 0.022 3.978 15 O -0.388 6.388 16 C 0.050 3.950 17 C 0.064 3.936 18 H 0.071 0.929 19 O -0.562 6.562 20 C 0.056 3.944 21 H 0.035 0.965 22 H 0.090 0.910 23 H 0.008 0.992 24 H 0.260 0.740 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.374 0.626 32 H 0.078 0.922 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -3.889 -10.411 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.258 5.258 13 C -0.099 4.099 14 C -0.054 4.054 15 O -0.307 6.307 16 C -0.029 4.029 17 C 0.005 3.995 18 H 0.089 0.911 19 O -0.366 6.366 20 C -0.072 4.072 21 H 0.054 0.946 22 H 0.108 0.892 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.220 0.780 32 H 0.096 0.904 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.811 -3.564 -9.794 10.453 hybrid contribution -0.572 -0.324 0.454 0.799 sum -1.383 -3.888 -9.339 10.210 Atomic orbital electron populations 1.22632 1.00937 0.99420 1.00423 1.19341 0.89687 0.94697 0.85677 0.94245 1.21125 1.30611 1.12575 0.89426 0.91744 1.24940 0.95204 0.95136 0.99056 1.69895 1.36986 1.23044 1.23392 0.86443 0.78534 0.79676 0.82782 1.19685 1.21054 1.21164 1.62288 1.59514 1.02031 1.01967 1.22479 0.92733 0.92538 1.02133 1.23787 0.99482 1.02807 0.79318 1.86367 1.87527 1.35877 1.20897 1.22471 0.95214 0.90549 0.94625 1.22644 0.95030 0.92824 0.89006 0.91097 1.86524 1.86548 1.39971 1.23589 1.21718 1.00231 0.96826 0.88413 0.94624 0.89182 0.97355 0.92999 0.88640 0.91642 0.90841 0.89001 0.94355 0.89516 0.77970 0.90372 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 7.26 37.16 0.27 -3.81 16 2 C 0.21 5.26 2.28 -68.86 -0.16 5.10 16 3 H 0.04 1.09 8.04 -51.93 -0.42 0.67 16 4 C -0.50 -13.38 7.63 -34.44 -0.26 -13.64 16 5 H 0.06 1.74 7.38 -52.49 -0.39 1.35 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.53 -11.48 4.74 -229.12 -1.09 -12.57 16 13 C 0.03 0.57 4.62 -4.53 -0.02 0.55 16 14 C 0.02 0.38 5.06 36.17 0.18 0.57 16 15 O -0.39 -6.37 9.95 -21.71 -0.22 -6.58 16 16 C 0.05 0.73 6.07 38.06 0.23 0.96 16 17 C 0.06 1.02 3.24 -26.84 -0.09 0.94 16 18 H 0.07 1.17 7.24 -51.93 -0.38 0.79 16 19 O -0.56 -8.04 13.23 -35.23 -0.47 -8.51 16 20 C 0.06 1.08 4.63 -4.21 -0.02 1.06 16 21 H 0.03 0.78 5.65 -51.93 -0.29 0.48 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 23 H 0.01 0.17 5.79 -51.93 -0.30 -0.13 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 25 H 0.10 1.98 6.40 -51.93 -0.33 1.65 16 26 H 0.07 1.20 7.24 -51.93 -0.38 0.83 16 27 H 0.07 1.35 3.86 -51.93 -0.20 1.15 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.04 0.57 7.72 -51.93 -0.40 0.17 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.37 3.37 9.09 45.56 0.41 3.78 16 32 H 0.08 1.59 7.99 -51.93 -0.41 1.18 16 33 H 0.03 0.64 5.00 -51.93 -0.26 0.38 16 LS Contribution 248.26 15.07 3.74 3.74 Total: -1.00 -29.00 248.26 -6.02 -35.02 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.64 Total: 4.11 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 0.04 Total: -6.82 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.46 Total: -37.00 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.68 Total: -15.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.00 -6.02 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306968669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.217 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds