Wall clock time and date at job start Mon Mar 30 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 N 1.46503 * 109.47263 * 183.55546 * 3 2 1 5 5 C 1.36933 * 119.99711 * 275.15698 * 4 3 2 6 6 H 1.08000 * 120.00399 * 356.17329 * 5 4 3 7 7 C 1.38811 * 120.00044 * 176.17908 * 5 4 3 8 8 N 1.31621 * 120.00179 * 36.58892 * 7 5 4 9 9 Si 1.86804 * 120.00310 * 216.59160 * 7 5 4 10 10 H 1.48499 * 109.46918 * 89.99461 * 9 7 5 11 11 H 1.48492 * 109.47411 * 209.99758 * 9 7 5 12 12 H 1.48500 * 109.46999 * 330.00058 * 9 7 5 13 13 C 1.46495 * 120.00202 * 95.15180 * 4 3 2 14 14 C 1.52999 * 109.46995 * 83.23836 * 13 4 3 15 15 O 1.43751 * 109.63649 * 54.05902 * 14 13 4 16 16 C 1.44778 * 104.82083 * 215.80988 * 15 14 13 17 17 C 1.54914 * 101.72112 * 36.09926 * 16 15 14 18 18 O 1.43371 * 109.63087 * 294.69559 * 14 13 4 19 19 H 1.08998 * 109.47135 * 300.00213 * 1 2 3 20 20 H 1.08992 * 109.46985 * 60.00147 * 1 2 3 21 21 H 1.08997 * 109.46366 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47651 * 240.00352 * 2 1 3 23 23 H 1.09002 * 109.47295 * 119.99405 * 2 1 3 24 24 H 1.08998 * 109.47238 * 63.55286 * 3 2 1 25 25 H 1.09001 * 109.47138 * 303.55456 * 3 2 1 26 26 H 0.97001 * 120.00354 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47604 * 203.23661 * 13 4 3 28 28 H 1.08997 * 109.47589 * 323.23755 * 13 4 3 29 29 H 1.08999 * 109.63121 * 174.30764 * 14 13 4 30 30 H 1.09000 * 110.97682 * 277.99389 * 16 15 14 31 31 H 1.08994 * 111.01204 * 154.22315 * 16 15 14 32 32 H 1.09000 * 110.70080 * 206.04426 * 17 16 15 33 33 H 1.09005 * 110.84128 * 82.90589 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5025 1.4435 -0.0857 5 6 4.2549 1.3130 1.0510 6 1 3.7724 1.2715 2.0163 7 6 5.6380 1.2342 0.9625 8 7 6.2812 1.9438 0.0597 9 14 6.5864 0.1209 2.1247 10 1 6.7190 -1.2286 1.5193 11 1 7.9365 0.6907 2.3645 12 1 5.8574 0.0153 3.4141 13 6 4.1599 1.5840 -1.3872 14 6 4.2453 3.0659 -1.7581 15 8 4.8832 3.7939 -0.6953 16 6 4.2056 5.0730 -0.6639 17 6 2.7504 4.6668 -1.0059 18 8 2.9252 3.5912 -1.9502 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.8935 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.7296 1.9377 0.9201 25 1 1.6255 1.9744 -0.8564 26 1 7.2477 1.8890 -0.0019 27 1 5.1645 1.1644 -1.3341 28 1 3.5838 1.0526 -2.1446 29 1 4.8223 3.1811 -2.6757 30 1 4.6101 5.7474 -1.4187 31 1 4.2628 5.5213 0.3279 32 1 2.2157 5.4987 -1.4644 33 1 2.2261 4.3170 -0.1165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306972902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:16 Heat of formation + Delta-G solvation = -52.175167 kcal Electronic energy + Delta-G solvation = -15892.503236 eV Core-core repulsion = 13341.064591 eV Total energy + Delta-G solvation = -2551.438646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17603 -35.82800 -33.72727 -32.90674 -30.65481 -29.45932 -26.56906 -25.39816 -22.69627 -22.23494 -20.96647 -19.72323 -16.85202 -16.24162 -15.41393 -14.94024 -14.40610 -14.20459 -13.66530 -13.45991 -12.94016 -12.70179 -12.28699 -12.24578 -11.47078 -11.38151 -11.28795 -10.96265 -10.63259 -10.54623 -10.50160 -10.19865 -10.01716 -9.74584 -9.58323 -9.14093 -8.58904 -7.99758 -6.75867 -5.67112 -2.79939 3.50247 3.59557 3.61433 4.46457 4.65935 5.20316 5.38846 5.48044 5.54915 5.62676 5.73195 5.82715 5.85608 6.08582 6.16016 6.30267 6.35718 6.44691 6.51460 6.59810 6.71415 6.77883 6.87067 6.98149 7.04173 7.25047 7.63166 7.96141 8.32136 8.48580 9.31847 10.03351 10.49975 11.37190 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.016243 C = 0.010280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.694686 B = 1723.440090 C = 2723.140315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.153 3.847 4 N -0.587 5.587 5 C -0.255 4.255 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.852 5.852 9 Si 0.863 3.137 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.284 1.284 13 C 0.144 3.856 14 C 0.221 3.779 15 O -0.278 6.278 16 C 0.001 3.999 17 C 0.032 3.968 18 O -0.401 6.401 19 H 0.046 0.954 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.248 0.752 27 H 0.116 0.884 28 H 0.025 0.975 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 2.947 -2.936 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.026 3.974 4 N -0.307 5.307 5 C -0.383 4.383 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.496 5.496 9 Si 0.692 3.308 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.209 1.209 13 C 0.017 3.983 14 C 0.124 3.876 15 O -0.196 6.196 16 C -0.077 4.077 17 C -0.045 4.045 18 O -0.323 6.323 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.133 0.867 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.307 2.827 -2.968 7.522 hybrid contribution 0.573 -0.325 0.667 0.937 sum -5.734 2.502 -2.302 6.666 Atomic orbital electron populations 1.21725 0.97540 1.00270 1.00884 1.22129 0.93418 1.01211 1.01541 1.20785 0.84587 0.93183 0.98835 1.43933 0.99594 1.84038 1.03155 1.19017 0.88570 1.44289 0.86417 0.90957 1.24599 0.96112 1.00032 0.97945 1.70343 1.06808 1.35081 1.37335 0.86828 0.79373 0.83343 0.81212 1.21949 1.22446 1.20916 1.21752 1.00392 0.90469 0.85679 1.24771 0.77629 0.96023 0.89179 1.89985 1.54586 1.21676 1.53323 1.24186 0.91297 0.90804 1.01387 1.23894 0.97711 0.89508 0.93391 1.88738 1.35296 1.50341 1.57949 0.93448 0.93432 0.93892 0.93016 0.92432 0.94950 0.93318 0.94150 0.86690 0.95690 0.93534 0.93331 0.89330 0.90805 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.69 6.23 -26.73 -0.17 -2.86 16 3 C 0.15 3.25 5.37 -4.04 -0.02 3.23 16 4 N -0.59 -14.50 2.36 -173.24 -0.41 -14.91 16 5 C -0.26 -6.95 9.28 -15.06 -0.14 -7.09 16 6 H 0.07 2.00 8.04 -52.49 -0.42 1.58 16 7 C 0.01 0.33 4.81 -17.43 -0.08 0.25 16 8 N -0.85 -23.79 8.18 55.49 0.45 -23.34 16 9 Si 0.86 21.57 29.68 -169.99 -5.04 16.52 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.14 3.48 5.30 -4.04 -0.02 3.46 16 14 C 0.22 5.04 4.24 37.16 0.16 5.19 16 15 O -0.28 -6.77 8.25 -59.04 -0.49 -7.26 16 16 C 0.00 0.03 7.95 38.17 0.30 0.33 16 17 C 0.03 0.58 8.07 38.17 0.31 0.88 16 18 O -0.40 -8.41 9.54 -59.04 -0.56 -8.98 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.05 1.02 6.63 -51.93 -0.34 0.67 16 26 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.12 3.07 5.35 -51.93 -0.28 2.79 16 28 H 0.02 0.57 8.12 -51.93 -0.42 0.14 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 LS Contribution 266.38 15.07 4.01 4.01 Total: -1.00 -29.06 266.38 -6.58 -35.63 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.24 Total: -3.24 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 0.70 Total: 1.55 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.05 Total: -38.24 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.05 Total: -16.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.52 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.06 -6.58 -35.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306972902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.541 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds