Wall clock time and date at job start Mon Mar 30 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 N 1.46503 * 109.47263 * 183.55546 * 3 2 1 5 5 C 1.36933 * 119.99711 * 275.15698 * 4 3 2 6 6 H 1.08000 * 120.00399 * 356.17329 * 5 4 3 7 7 C 1.38811 * 120.00044 * 176.17908 * 5 4 3 8 8 N 1.31621 * 120.00179 * 36.58892 * 7 5 4 9 9 Si 1.86804 * 120.00310 * 216.59160 * 7 5 4 10 10 H 1.48499 * 109.46918 * 89.99461 * 9 7 5 11 11 H 1.48492 * 109.47411 * 209.99758 * 9 7 5 12 12 H 1.48500 * 109.46999 * 330.00058 * 9 7 5 13 13 C 1.46495 * 120.00202 * 95.15180 * 4 3 2 14 14 C 1.52999 * 109.46995 * 83.23836 * 13 4 3 15 15 O 1.43751 * 109.63649 * 54.05902 * 14 13 4 16 16 C 1.44778 * 104.82083 * 215.80988 * 15 14 13 17 17 C 1.54914 * 101.72112 * 36.09926 * 16 15 14 18 18 O 1.43371 * 109.63087 * 294.69559 * 14 13 4 19 19 H 1.08998 * 109.47135 * 300.00213 * 1 2 3 20 20 H 1.08992 * 109.46985 * 60.00147 * 1 2 3 21 21 H 1.08997 * 109.46366 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47651 * 240.00352 * 2 1 3 23 23 H 1.09002 * 109.47295 * 119.99405 * 2 1 3 24 24 H 1.08998 * 109.47238 * 63.55286 * 3 2 1 25 25 H 1.09001 * 109.47138 * 303.55456 * 3 2 1 26 26 H 0.97001 * 120.00354 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47604 * 203.23661 * 13 4 3 28 28 H 1.08997 * 109.47589 * 323.23755 * 13 4 3 29 29 H 1.08999 * 109.63121 * 174.30764 * 14 13 4 30 30 H 1.09000 * 110.97682 * 277.99389 * 16 15 14 31 31 H 1.08994 * 111.01204 * 154.22315 * 16 15 14 32 32 H 1.09000 * 110.70080 * 206.04426 * 17 16 15 33 33 H 1.09005 * 110.84128 * 82.90589 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5025 1.4435 -0.0857 5 6 4.2549 1.3130 1.0510 6 1 3.7724 1.2715 2.0163 7 6 5.6380 1.2342 0.9625 8 7 6.2812 1.9438 0.0597 9 14 6.5864 0.1209 2.1247 10 1 6.7190 -1.2286 1.5193 11 1 7.9365 0.6907 2.3645 12 1 5.8574 0.0153 3.4141 13 6 4.1599 1.5840 -1.3872 14 6 4.2453 3.0659 -1.7581 15 8 4.8832 3.7939 -0.6953 16 6 4.2056 5.0730 -0.6639 17 6 2.7504 4.6668 -1.0059 18 8 2.9252 3.5912 -1.9502 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.8935 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.7296 1.9377 0.9201 25 1 1.6255 1.9744 -0.8564 26 1 7.2477 1.8890 -0.0019 27 1 5.1645 1.1644 -1.3341 28 1 3.5838 1.0526 -2.1446 29 1 4.8223 3.1811 -2.6757 30 1 4.6101 5.7474 -1.4187 31 1 4.2628 5.5213 0.3279 32 1 2.2157 5.4987 -1.4644 33 1 2.2261 4.3170 -0.1165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306972902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:16 Heat of formation + Delta-G solvation = -69.570175 kcal Electronic energy + Delta-G solvation = -15893.257541 eV Core-core repulsion = 13341.064591 eV Total energy + Delta-G solvation = -2552.192950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83299 -37.63287 -35.41446 -34.60527 -32.53067 -31.08794 -28.29330 -27.18268 -24.44694 -23.76694 -22.62034 -21.50062 -18.77052 -17.88686 -17.10405 -16.75156 -16.20359 -15.84857 -15.44437 -15.13612 -14.59241 -14.27277 -13.93517 -13.82402 -13.26988 -13.08351 -12.99437 -12.61972 -12.48684 -12.19803 -12.07608 -11.96069 -11.89574 -11.56308 -11.35477 -10.73281 -10.37814 -9.99026 -8.70646 -7.74203 -4.86754 1.48854 1.55716 1.59529 2.62482 2.90484 3.27275 3.61872 3.73829 4.01495 4.19347 4.30458 4.41216 4.46841 4.61902 4.67129 4.78012 4.87306 4.87833 4.93093 5.01194 5.07182 5.26050 5.29107 5.37134 5.47367 5.61966 5.71302 5.83598 6.39019 6.72007 7.27078 8.04500 8.48283 9.27544 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.016243 C = 0.010280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.694686 B = 1723.440090 C = 2723.140315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.156 3.844 4 N -0.597 5.597 5 C -0.261 4.261 6 H 0.062 0.938 7 C -0.027 4.027 8 N -0.864 5.864 9 Si 0.916 3.084 10 H -0.296 1.296 11 H -0.303 1.303 12 H -0.282 1.282 13 C 0.144 3.856 14 C 0.227 3.773 15 O -0.318 6.318 16 C -0.004 4.004 17 C 0.034 3.966 18 O -0.406 6.406 19 H 0.054 0.946 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.242 0.758 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 3.324 -3.141 9.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.030 3.970 4 N -0.319 5.319 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.224 4.224 8 N -0.508 5.508 9 Si 0.746 3.254 10 H -0.223 1.223 11 H -0.230 1.230 12 H -0.207 1.207 13 C 0.017 3.983 14 C 0.130 3.870 15 O -0.236 6.236 16 C -0.081 4.081 17 C -0.042 4.042 18 O -0.328 6.328 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.609 3.205 -3.171 8.844 hybrid contribution 0.923 -0.382 0.734 1.240 sum -6.686 2.823 -2.436 7.656 Atomic orbital electron populations 1.21644 0.94284 1.01816 1.01790 1.21994 0.96221 0.98993 1.00362 1.20870 0.82804 0.94689 0.98656 1.44050 1.00835 1.84379 1.02595 1.19078 0.88915 1.44101 0.86902 0.91967 1.25052 0.96802 1.00916 0.99658 1.70482 1.06290 1.35550 1.38506 0.86011 0.77986 0.81509 0.79856 1.22346 1.23049 1.20719 1.21608 0.99017 0.91829 0.85815 1.24521 0.78435 0.95061 0.89020 1.89924 1.55756 1.24022 1.53925 1.24429 0.91559 0.89406 1.02742 1.24044 0.97407 0.89773 0.93023 1.88713 1.34311 1.51303 1.58494 0.92676 0.92393 0.92066 0.93758 0.94055 0.95504 0.92816 0.94829 0.89445 0.94685 0.93043 0.91013 0.88588 0.86638 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.14 -4.95 6.23 30.60 0.19 -4.76 16 3 C 0.16 6.47 5.37 86.38 0.46 6.93 16 4 N -0.60 -29.45 2.36 -702.02 -1.66 -31.11 16 5 C -0.26 -14.29 9.28 84.03 0.78 -13.51 16 6 H 0.06 3.46 8.04 -2.91 -0.02 3.44 16 7 C -0.03 -1.47 4.81 84.86 0.41 -1.06 16 8 N -0.86 -48.75 8.18 21.65 0.18 -48.57 16 9 Si 0.92 44.92 29.68 68.60 2.04 46.96 16 10 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 13 C 0.14 6.97 5.30 86.38 0.46 7.43 16 14 C 0.23 10.18 4.24 71.98 0.31 10.49 16 15 O -0.32 -15.32 8.25 -126.22 -1.04 -16.36 16 16 C 0.00 -0.14 7.95 72.64 0.58 0.43 16 17 C 0.03 1.14 8.07 72.64 0.59 1.72 16 18 O -0.41 -16.27 9.54 -126.22 -1.20 -17.48 16 19 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 25 H 0.05 2.16 6.63 -2.39 -0.02 2.15 16 26 H 0.24 13.50 8.31 -92.71 -0.77 12.73 16 27 H 0.09 4.74 5.35 -2.39 -0.01 4.73 16 28 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.25 16 32 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.05 1.97 8.07 -2.38 -0.02 1.95 16 Total: -1.00 -61.02 266.38 3.86 -57.16 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.07 Total: 4.80 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.48 Total: 4.59 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -1.48 Total: -79.68 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -2.25 Total: -33.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.04 Total: 46.96 kcal Total: -61.02 3.86 -57.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306972902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.410 kcal (2) G-P(sol) polarization free energy of solvation -61.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds