Wall clock time and date at job start Mon Mar 30 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.52995 * 115.55043 * 325.66382 * 15 13 12 17 17 C 1.53000 * 117.50124 * 111.38104 * 15 13 12 18 18 C 1.53005 * 60.00138 * 107.48778 * 17 15 13 19 19 H 1.08991 * 117.49926 * 107.49137 * 18 17 15 20 20 F 1.39897 * 117.49487 * 252.51068 * 18 17 15 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 26 26 H 1.09010 * 109.46946 * 34.42524 * 16 15 13 27 27 H 1.08996 * 109.47444 * 154.41937 * 16 15 13 28 28 H 1.08998 * 109.47486 * 274.42256 * 16 15 13 29 29 H 1.09003 * 117.49555 * 214.97573 * 17 15 13 30 30 H 1.08992 * 117.49849 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.2324 -2.1944 3.7200 17 6 4.0314 -0.3362 4.1148 18 6 2.7735 0.0898 4.8745 19 1 2.5582 -0.4164 5.8155 20 9 2.4115 1.4400 4.8189 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 2.2490 -1.6317 1.1528 26 1 2.1869 -2.6500 2.7308 27 1 2.9615 -2.7259 4.3315 28 1 1.2516 -2.2518 4.1920 29 1 4.6436 -1.1228 4.5559 30 1 4.5770 0.4352 3.5714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307090280.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:24 Heat of formation + Delta-G solvation = -68.178721 kcal Electronic energy + Delta-G solvation = -14642.651923 eV Core-core repulsion = 11967.059006 eV Total energy + Delta-G solvation = -2675.592917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.22751 -39.25544 -36.24402 -34.68151 -32.36806 -29.32667 -28.01087 -25.25265 -23.38505 -22.35525 -20.45298 -18.98754 -17.27186 -16.30060 -15.55334 -15.23751 -14.71275 -14.34977 -14.12107 -13.72025 -13.23814 -12.79146 -12.55847 -12.32086 -12.28131 -11.78824 -11.63510 -11.08745 -10.95691 -10.73310 -10.29293 -10.23734 -10.15197 -9.73092 -9.03176 -8.91226 -8.54623 -7.87940 -6.11765 -4.21180 3.02891 3.23683 3.31236 3.33944 3.78752 3.99785 4.20087 4.35946 4.61690 4.89696 5.03664 5.20250 5.30342 5.58476 5.64556 5.73478 5.83598 6.12517 6.19228 6.84418 6.99127 7.16841 7.48335 7.57861 7.70526 7.93020 8.16030 8.68606 8.79465 9.15767 9.46656 10.94341 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.048934 B = 0.007513 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.062546 B = 3725.779590 C = 3936.465094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.532 3.468 14 O -0.539 6.539 15 C -0.177 4.177 16 C -0.113 4.113 17 C -0.166 4.166 18 C 0.048 3.952 19 H 0.134 0.866 20 F -0.165 7.165 21 H 0.015 0.985 22 H 0.090 0.910 23 H 0.026 0.974 24 H 0.264 0.736 25 H 0.388 0.612 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -6.841 11.536 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.352 5.352 13 C 0.315 3.685 14 O -0.417 6.417 15 C -0.181 4.181 16 C -0.170 4.170 17 C -0.204 4.204 18 C 0.012 3.988 19 H 0.151 0.849 20 F -0.145 7.145 21 H 0.034 0.966 22 H 0.108 0.892 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.587 -5.821 11.376 13.273 hybrid contribution 0.383 -0.828 -0.966 1.329 sum 3.970 -6.648 10.410 12.974 Atomic orbital electron populations 1.22071 0.98424 0.99088 1.00923 1.18765 0.91077 0.94000 0.79942 0.93409 1.21248 1.32453 1.13124 0.90307 0.92040 1.24898 0.94842 0.94956 0.99079 1.69916 1.35952 1.22408 1.23776 0.86389 0.78618 0.79491 0.82562 1.19746 1.20852 1.20873 1.46481 1.64940 1.13570 1.10196 1.19174 0.78886 0.86837 0.83585 1.90721 1.50599 1.15584 1.84763 1.22422 1.02189 0.97691 0.95769 1.21344 1.01727 0.90837 1.03112 1.23788 0.90291 1.04000 1.02289 1.22032 1.01707 0.79306 0.95767 0.84907 1.92888 1.92075 1.32231 1.97296 0.96626 0.89152 0.95472 0.92615 0.77885 0.91011 0.91593 0.91423 0.86684 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.31 8.72 -34.44 -0.30 -14.61 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 7 N -0.88 -25.21 11.33 55.43 0.63 -24.59 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.70 -15.14 4.97 -54.93 -0.27 -15.41 16 13 C 0.53 11.21 7.36 -10.99 -0.08 11.13 16 14 O -0.54 -13.81 14.81 5.55 0.08 -13.73 16 15 C -0.18 -2.65 2.61 -155.66 -0.41 -3.06 16 16 C -0.11 -1.26 9.79 37.16 0.36 -0.89 16 17 C -0.17 -2.08 9.87 -26.73 -0.26 -2.35 16 18 C 0.05 0.67 7.54 -26.73 -0.20 0.47 16 19 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 20 F -0.16 -3.07 15.71 2.25 0.04 -3.03 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.09 2.49 6.08 -51.93 -0.32 2.18 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.39 7.18 6.84 -40.82 -0.28 6.90 16 26 H 0.07 0.82 6.38 -51.92 -0.33 0.48 16 27 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 260.28 15.07 3.92 3.92 Total: -1.00 -32.33 260.28 -5.25 -37.58 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.80 Total: 3.83 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.82 Total: -4.31 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.36 Total: -39.99 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.33 -5.25 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090280.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.603 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds