Wall clock time and date at job start Mon Mar 30 2020 02:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.52995 * 115.55043 * 325.66382 * 15 13 12 17 17 C 1.53000 * 117.50124 * 111.38104 * 15 13 12 18 18 C 1.53005 * 60.00138 * 107.48778 * 17 15 13 19 19 H 1.08991 * 117.49926 * 107.49137 * 18 17 15 20 20 F 1.39897 * 117.49487 * 252.51068 * 18 17 15 21 21 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 22 22 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 26 26 H 1.09010 * 109.46946 * 34.42524 * 16 15 13 27 27 H 1.08996 * 109.47444 * 154.41937 * 16 15 13 28 28 H 1.08998 * 109.47486 * 274.42256 * 16 15 13 29 29 H 1.09003 * 117.49555 * 214.97573 * 17 15 13 30 30 H 1.08992 * 117.49849 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.2324 -2.1944 3.7200 17 6 4.0314 -0.3362 4.1148 18 6 2.7735 0.0898 4.8745 19 1 2.5582 -0.4164 5.8155 20 9 2.4115 1.4400 4.8189 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7173 1.1669 -3.4844 25 1 2.2490 -1.6317 1.1528 26 1 2.1869 -2.6500 2.7308 27 1 2.9615 -2.7259 4.3315 28 1 1.2516 -2.2518 4.1920 29 1 4.6436 -1.1228 4.5559 30 1 4.5770 0.4352 3.5714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307090280.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:23 Heat of formation + Delta-G solvation = -90.870758 kcal Electronic energy + Delta-G solvation = -14643.635923 eV Core-core repulsion = 11967.059006 eV Total energy + Delta-G solvation = -2676.576918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.49688 -40.85269 -37.60755 -36.59757 -34.35041 -31.13502 -29.13513 -27.38169 -24.94382 -23.37677 -22.30963 -20.69016 -18.79821 -17.87431 -17.30705 -16.75159 -16.44002 -15.83107 -15.59702 -15.25749 -14.63790 -14.37748 -14.01061 -13.76709 -13.55396 -13.32794 -12.98557 -12.88914 -12.77064 -12.74838 -12.31437 -12.12424 -11.25009 -11.14550 -10.83467 -10.67468 -10.52987 -9.78349 -8.20006 -6.38472 1.43427 1.44040 1.56627 1.58531 2.29526 2.50557 2.66460 3.10306 3.13177 3.57758 3.78778 3.98230 4.11278 4.65521 4.70320 4.75798 4.85467 4.88631 4.93861 5.05308 5.14039 5.29526 5.40053 5.58034 5.64627 5.86971 6.06090 6.69656 6.92699 7.29487 7.53050 8.86920 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.048934 B = 0.007513 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.062546 B = 3725.779590 C = 3936.465094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.698 5.698 13 C 0.520 3.480 14 O -0.596 6.596 15 C -0.191 4.191 16 C -0.106 4.106 17 C -0.145 4.145 18 C 0.038 3.962 19 H 0.186 0.814 20 F -0.200 7.200 21 H 0.007 0.993 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.266 0.734 25 H 0.405 0.595 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -9.776 12.512 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.181 1.181 10 H -0.203 1.203 11 H -0.210 1.210 12 N -0.347 5.347 13 C 0.307 3.693 14 O -0.478 6.478 15 C -0.195 4.195 16 C -0.163 4.163 17 C -0.182 4.182 18 C 0.002 3.998 19 H 0.202 0.798 20 F -0.181 7.181 21 H 0.027 0.973 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.878 -8.803 12.377 15.953 hybrid contribution -0.008 0.146 -1.242 1.251 sum 4.871 -8.656 11.136 14.922 Atomic orbital electron populations 1.21884 0.98256 0.99559 0.99381 1.18367 0.91208 0.91767 0.82133 0.98953 1.21557 1.32705 1.13511 0.90640 0.90669 1.25871 0.94848 0.95572 1.02530 1.70072 1.37084 1.23971 1.24636 0.85231 0.78128 0.78494 0.78080 1.18109 1.20267 1.21005 1.46231 1.64889 1.14257 1.09367 1.20299 0.77518 0.86442 0.85054 1.90689 1.52843 1.18367 1.85855 1.22393 1.04505 0.99567 0.93018 1.21407 1.03307 0.87850 1.03737 1.23974 0.89398 1.04239 1.00599 1.22805 1.02331 0.77546 0.97123 0.79769 1.92815 1.92512 1.35271 1.97488 0.97348 0.91451 0.93755 0.92499 0.75861 0.91620 0.87377 0.90888 0.81384 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.97 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.54 2.56 44.25 0.11 14.65 16 3 H -0.01 -0.48 7.58 -2.39 -0.02 -0.50 16 4 C -0.55 -29.47 8.72 25.60 0.22 -29.24 16 5 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.64 5.31 84.65 0.45 1.09 16 7 N -0.92 -53.85 11.33 21.45 0.24 -53.61 16 8 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.70 -30.31 4.97 -446.09 -2.22 -32.53 16 13 C 0.52 22.25 7.36 87.66 0.64 22.90 16 14 O -0.60 -32.11 14.81 -3.04 -0.05 -32.16 16 15 C -0.19 -5.32 2.61 -52.93 -0.14 -5.45 16 16 C -0.11 -1.92 9.79 71.98 0.70 -1.22 16 17 C -0.14 -3.18 9.87 30.60 0.30 -2.88 16 18 C 0.04 0.95 7.54 30.60 0.23 1.18 16 19 H 0.19 2.65 8.14 -2.39 -0.02 2.63 16 20 F -0.20 -7.51 15.71 44.97 0.71 -6.80 16 21 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 22 H 0.07 3.87 6.08 -2.38 -0.01 3.85 16 23 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.40 14.59 6.84 -92.71 -0.63 13.95 16 26 H 0.06 1.27 6.38 -2.38 -0.02 1.26 16 27 H 0.11 1.09 7.90 -2.39 -0.02 1.07 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.17 1.91 8.05 -2.39 -0.02 1.89 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -75.05 260.28 4.42 -70.63 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.51 Total: 15.47 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.20 Total: -5.29 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -1.97 Total: -86.14 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.71 Total: -6.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -75.05 4.42 -70.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090280.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.244 kcal (2) G-P(sol) polarization free energy of solvation -75.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds